Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QMO entry

There are 4 chains in PDB entry 8QMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ILE 690
B	GLU 11	ASP 724
C	ALA 2	SER 329
D	LEU 272	LEU 427

There are 72 helices in PDB entry 8QMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	37	61	Right-handed alpha
Helix 3	AA3	A	62	67	Right-handed 310
Helix 4	AA4	A	94	103	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	131	138	Right-handed 310
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	194	206	Right-handed alpha
Helix 9	AA9	A	287	291	Right-handed 310
Helix 10	AB1	A	292	296	Right-handed 310
Helix 11	AB2	A	297	310	Right-handed alpha
Helix 12	AB3	A	371	375	Right-handed 310
Helix 13	AB4	A	399	421	Right-handed alpha
Helix 14	AB5	A	422	444	Right-handed alpha
Helix 15	AB6	A	447	453	Right-handed alpha
Helix 16	AB7	A	468	475	Right-handed alpha
Helix 17	AB8	A	490	496	Right-handed alpha
Helix 18	AB9	A	500	506	Right-handed alpha
Helix 19	AC1	A	515	523	Right-handed alpha
Helix 20	AC2	A	546	571	Right-handed alpha
Helix 21	AC3	A	599	608	Right-handed alpha
Helix 22	AC4	A	616	620	Right-handed 310
Helix 23	AC5	A	632	645	Right-handed alpha
Helix 24	AC6	A	648	666	Right-handed alpha
Helix 25	AC7	A	672	689	Right-handed alpha
Helix 26	AC8	B	20	32	Right-handed alpha
Helix 27	AC9	B	37	61	Right-handed alpha
Helix 28	AD1	B	62	65	Right-handed 310
Helix 29	AD2	B	94	103	Right-handed alpha
Helix 30	AD3	B	108	117	Right-handed alpha
Helix 31	AD4	B	131	138	Right-handed 310
Helix 32	AD5	B	189	193	Right-handed 310
Helix 33	AD6	B	194	206	Right-handed alpha
Helix 34	AD7	B	287	291	Right-handed 310
Helix 35	AD8	B	292	296	Right-handed 310
Helix 36	AD9	B	297	310	Right-handed alpha
Helix 37	AE1	B	371	375	Right-handed 310
Helix 38	AE2	B	399	420	Right-handed alpha
Helix 39	AE3	B	422	444	Right-handed alpha
Helix 40	AE4	B	447	453	Right-handed alpha
Helix 41	AE5	B	468	475	Right-handed alpha
Helix 42	AE6	B	490	496	Right-handed alpha
Helix 43	AE7	B	500	506	Right-handed alpha
Helix 44	AE8	B	515	523	Right-handed alpha
Helix 45	AE9	B	546	560	Right-handed alpha
Helix 46	AF1	B	560	571	Right-handed alpha
Helix 47	AF2	B	599	608	Right-handed alpha
Helix 48	AF3	B	613	620	Right-handed 310
Helix 49	AF4	B	632	645	Right-handed alpha
Helix 50	AF5	B	648	666	Right-handed alpha
Helix 51	AF6	B	672	689	Right-handed alpha
Helix 52	AF7	B	715	721	Right-handed alpha
Helix 53	AF8	C	3	12	Right-handed alpha
Helix 54	AF9	C	71	79	Right-handed alpha
Helix 55	AG1	C	97	101	Right-handed 310
Helix 56	AG2	C	139	143	Right-handed 310
Helix 57	AG3	C	166	170	Right-handed 310
Helix 58	AG4	C	171	193	Right-handed alpha
Helix 59	AG5	C	195	214	Right-handed alpha
Helix 60	AG6	C	220	229	Right-handed alpha
Helix 61	AG7	C	229	244	Right-handed alpha
Helix 62	AG8	C	246	262	Right-handed alpha
Helix 63	AG9	C	264	278	Right-handed alpha
Helix 64	AH1	C	280	295	Right-handed alpha
Helix 65	AH2	C	298	324	Right-handed alpha
Helix 66	AH3	D	301	308	Right-handed alpha
Helix 67	AH4	D	311	317	Right-handed alpha
Helix 68	AH5	D	321	325	Right-handed 310
Helix 69	AH6	D	326	328	Right-handed 310
Helix 70	AH7	D	329	344	Right-handed alpha
Helix 71	AH8	D	387	397	Right-handed alpha
Helix 72	AH9	D	421	425	Right-handed 310

There are 12 sheets in PDB entry 8QMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	154	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	73	78	anti-parallel
Strand 8	B	213	215	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	140	148	anti-parallel
Strand 7	A	154	159	anti-parallel
Strand 8	A	164	169	anti-parallel
Strand 9	B	12	16	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	510	513	anti-parallel
Strand 3	A	482	487	parallel
Strand 4	A	531	535	parallel
Strand 5	A	527	528	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	624	628	parallel
Strand 3	A	589	593	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	323	first strand
Strand 2	B	329	335	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	360	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	510	513	anti-parallel
Strand 3	B	483	487	parallel
Strand 4	B	531	535	parallel
Strand 5	B	527	528	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	624	628	parallel
Strand 3	B	589	593	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	85	88	anti-parallel
Strand 3	C	148	158	anti-parallel
Strand 4	C	33	42	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	300	first strand
Strand 2	D	287	291	anti-parallel
Strand 3	D	376	386	anti-parallel
Strand 4	D	360	371	anti-parallel
Strand 5	D	345	354	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMO