Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QMP entry

There is 1 chain in PDB entry 8QMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 115VAL 1047
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8QMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 127Right-handed alpha
Helix 2
AA2
A
137 142Right-handed alpha
Helix 3
AA3
A
158 168Right-handed alpha
Helix 4
AA4
A
182 190Right-handed alpha
Helix 5
AA5
A
191 213Right-handed alpha
Helix 6
AA6
A
218 251Right-handed alpha
Helix 7
AA7
A
270 274Right-handed 310
Helix 8
AA8
A
304 307Right-handed 310
Helix 9
AA9
A
342 345Right-handed 310
Helix 10
AB1
A
346 354Right-handed alpha
Helix 11
AB2
A
363 398Right-handed alpha
Helix 12
AB3
A
422 438Right-handed alpha
Helix 13
AB4
A
441 460Right-handed alpha
Helix 14
AB5
A
468 473Right-handed alpha
Helix 15
AB6
A
510 524Right-handed alpha
Helix 16
AB7
A
543 556Right-handed alpha
Helix 17
AB8
A
559 565Right-handed alpha
Helix 18
AB9
A
601 607Right-handed alpha
Helix 19
AC1
A
622 639Right-handed alpha
Helix 20
AC2
A
688 698Right-handed alpha
Helix 21
AC3
A
709 721Right-handed alpha
Helix 22
AC4
A
736 743Right-handed alpha
Helix 23
AC5
A
762 776Right-handed alpha
Helix 24
AC6
A
786 788Right-handed 310
Helix 25
AC7
A
789 796Right-handed alpha
Helix 26
AC8
A
807 813Right-handed alpha
Helix 27
AC9
A
823 866Right-handed alpha
Helix 28
AD1
A
871 892Right-handed alpha
Helix 29
AD2
A
897 902Right-handed alpha
Helix 30
AD3
A
913 942Right-handed alpha
Helix 31
AD4
A
948 977Right-handed alpha
Helix 32
AD5
A
987 1007Right-handed alpha
Helix 33
AD6
A
1021 1034Right-handed alpha
Helix 34
AD7
A
1034 1045Right-handed alpha
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There are 5 sheets in PDB entry 8QMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
328 341anti-parallel
Strand 3
A
287 288anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
328 341anti-parallel
Strand 3
A
291 303anti-parallel
Strand 4
A
314 315anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
816 818anti-parallel
Strand 3
A
798 802parallel
Strand 4
A
780 784parallel
Strand 5
A
478 481parallel
Strand 6
A
701 705parallel
Strand 7
A
757 758parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 497first strand
Strand 2
A
672 681anti-parallel
Strand 3
A
644 649anti-parallel
Strand 4
A
593 600anti-parallel
Strand 5
A
582 588anti-parallel
Strand 6
A
567 573anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 497first strand
Strand 2
A
672 681anti-parallel
Strand 3
A
608 612parallel
Strand 4
A
618 620anti-parallel
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