Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QMV entry

There are 6 chains in PDB entry 8QMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 6	THR 186
A	ASP 188	PHE 453
B	TYR 6	THR 186
B	ASP 188	GLU 454
C	TYR 6	THR 186
C	ASP 188	HIS 372

There are 93 helices in PDB entry 8QMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	62	68	Right-handed 310
Helix 4	AA4	A	69	74	Right-handed alpha
Helix 5	AA5	A	90	94	Right-handed 310
Helix 6	AA6	A	98	107	Right-handed alpha
Helix 7	AA7	A	109	113	Right-handed 310
Helix 8	AA8	A	127	132	Right-handed alpha
Helix 9	AA9	A	140	149	Right-handed alpha
Helix 10	AB1	A	167	182	Right-handed alpha
Helix 11	AB2	A	199	219	Right-handed alpha
Helix 12	AB3	A	232	246	Right-handed alpha
Helix 13	AB4	A	255	259	Right-handed alpha
Helix 14	AB5	A	259	274	Right-handed alpha
Helix 15	AB6	A	283	289	Right-handed alpha
Helix 16	AB7	A	296	308	Right-handed alpha
Helix 17	AB8	A	324	337	Right-handed alpha
Helix 18	AB9	A	343	347	Right-handed 310
Helix 19	AC1	A	369	371	Right-handed 310
Helix 20	AC2	A	372	381	Right-handed alpha
Helix 21	AC3	A	389	394	Right-handed alpha
Helix 22	AC4	A	398	419	Right-handed alpha
Helix 23	AC5	A	426	436	Right-handed alpha
Helix 24	AC6	A	438	449	Right-handed alpha
Helix 25	AC7	B	13	18	Right-handed alpha
Helix 26	AC8	B	42	54	Right-handed alpha
Helix 27	AC9	B	62	68	Right-handed 310
Helix 28	AD1	B	69	74	Right-handed alpha
Helix 29	AD2	B	90	94	Right-handed 310
Helix 30	AD3	B	98	107	Right-handed alpha
Helix 31	AD4	B	127	132	Right-handed alpha
Helix 32	AD5	B	140	149	Right-handed alpha
Helix 33	AD6	B	167	181	Right-handed alpha
Helix 34	AD7	B	199	219	Right-handed alpha
Helix 35	AD8	B	232	246	Right-handed alpha
Helix 36	AD9	B	255	259	Right-handed alpha
Helix 37	AE1	B	259	274	Right-handed alpha
Helix 38	AE2	B	284	289	Right-handed alpha
Helix 39	AE3	B	296	308	Right-handed alpha
Helix 40	AE4	B	324	337	Right-handed alpha
Helix 41	AE5	B	343	347	Right-handed 310
Helix 42	AE6	B	369	371	Right-handed 310
Helix 43	AE7	B	372	381	Right-handed alpha
Helix 44	AE8	B	389	394	Right-handed alpha
Helix 45	AE9	B	398	419	Right-handed alpha
Helix 46	AF1	B	426	437	Right-handed alpha
Helix 47	AF2	B	438	448	Right-handed alpha
Helix 48	AF3	C	13	18	Right-handed alpha
Helix 49	AF4	C	42	54	Right-handed alpha
Helix 50	AF5	C	62	68	Right-handed 310
Helix 51	AF6	C	69	74	Right-handed alpha
Helix 52	AF7	C	90	94	Right-handed 310
Helix 53	AF8	C	98	107	Right-handed alpha
Helix 54	AF9	C	127	132	Right-handed alpha
Helix 55	AG1	C	140	149	Right-handed alpha
Helix 56	AG2	C	167	182	Right-handed alpha
Helix 57	AG3	C	199	219	Right-handed alpha
Helix 58	AG4	C	232	246	Right-handed alpha
Helix 59	AG5	C	255	259	Right-handed alpha
Helix 60	AG6	C	259	274	Right-handed alpha
Helix 61	AG7	C	284	289	Right-handed alpha
Helix 62	AG8	C	296	308	Right-handed alpha
Helix 63	AG9	C	324	337	Right-handed alpha
Helix 64	AH1	C	343	347	Right-handed 310
Helix 65	AH2	C	369	371	Right-handed 310
Helix 66	AH3	C	372	381	Right-handed alpha
Helix 67	AH4	C	389	394	Right-handed alpha
Helix 68	AH5	C	398	419	Right-handed alpha
Helix 69	AH6	C	426	436	Right-handed alpha
Helix 70	AH7	C	438	449	Right-handed alpha
Helix 71	AH8	D	13	18	Right-handed alpha
Helix 72	AH9	D	42	54	Right-handed alpha
Helix 73	AI1	D	62	68	Right-handed 310
Helix 74	AI2	D	69	74	Right-handed alpha
Helix 75	AI3	D	90	94	Right-handed 310
Helix 76	AI4	D	98	107	Right-handed alpha
Helix 77	AI5	D	127	132	Right-handed alpha
Helix 78	AI6	D	140	149	Right-handed alpha
Helix 79	AI7	D	167	182	Right-handed alpha
Helix 80	AI8	D	199	219	Right-handed alpha
Helix 81	AI9	D	232	246	Right-handed alpha
Helix 82	AJ1	D	255	259	Right-handed alpha
Helix 83	AJ2	D	259	274	Right-handed alpha
Helix 84	AJ3	D	283	289	Right-handed alpha
Helix 85	AJ4	D	296	308	Right-handed alpha
Helix 86	AJ5	D	324	337	Right-handed alpha
Helix 87	AJ6	D	343	347	Right-handed 310
Helix 88	AJ7	D	369	371	Right-handed 310
Helix 89	AJ8	D	372	381	Right-handed alpha
Helix 90	AJ9	D	389	394	Right-handed alpha
Helix 91	AK1	D	398	419	Right-handed alpha
Helix 92	AK2	D	426	437	Right-handed alpha
Helix 93	AK3	D	438	449	Right-handed alpha

There are 15 sheets in PDB entry 8QMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	29	37	anti-parallel
Strand 4	A	116	125	anti-parallel
Strand 5	A	294	295	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	385	387	parallel
Strand 3	A	361	365	parallel
Strand 4	A	311	313	parallel
Strand 5	A	276	280	parallel
Strand 6	A	250	254	parallel
Strand 7	A	223	227	parallel
Strand 8	A	185	187	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	352	353	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	29	37	anti-parallel
Strand 4	B	116	125	anti-parallel
Strand 5	B	294	295	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	385	387	parallel
Strand 3	B	361	365	parallel
Strand 4	B	311	313	parallel
Strand 5	B	276	280	parallel
Strand 6	B	250	254	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	223	225	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	352	353	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	81	first strand
Strand 2	C	84	89	anti-parallel
Strand 3	C	29	37	anti-parallel
Strand 4	C	116	125	anti-parallel
Strand 5	C	294	295	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	385	387	parallel
Strand 3	C	361	365	parallel
Strand 4	C	311	313	parallel
Strand 5	C	276	280	parallel
Strand 6	C	250	254	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	223	225	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	352	353	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	81	first strand
Strand 2	D	84	89	anti-parallel
Strand 3	D	29	37	anti-parallel
Strand 4	D	116	125	anti-parallel
Strand 5	D	294	295	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	385	387	parallel
Strand 3	D	361	365	parallel
Strand 4	D	311	313	parallel
Strand 5	D	276	280	parallel
Strand 6	D	250	254	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	223	225	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	352	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMV