Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QMZ entry

There are 4 chains in PDB entry 8QMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 228ARG 547
B
 LEU 228ASP 545
C
 LEU 228ARG 547
D
 LEU 228ARG 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 8QMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
270 275Right-handed 310
Helix 3
AA3
A
276 284Right-handed alpha
Helix 4
AA4
A
304 308Right-handed 310
Helix 5
AA5
A
309 325Right-handed alpha
Helix 6
AA6
A
335 348Right-handed alpha
Helix 7
AA7
A
370 378Right-handed alpha
Helix 8
AA8
A
379 381Right-handed 310
Helix 9
AA9
A
382 387Right-handed alpha
Helix 10
AB1
A
391 399Right-handed alpha
Helix 11
AB2
A
400 409Right-handed alpha
Helix 12
AB3
A
411 415Right-handed 310
Helix 13
AB4
A
418 420Right-handed 310
Helix 14
AB5
A
421 426Right-handed alpha
Helix 15
AB6
A
443 456Right-handed alpha
Helix 16
AB7
A
459 465Right-handed alpha
Helix 17
AB8
A
468 478Right-handed alpha
Helix 18
AB9
A
500 505Right-handed 310
Helix 19
AC1
A
506 510Right-handed 310
Helix 20
AC2
A
525 530Right-handed alpha
Helix 21
AC3
A
530 546Right-handed alpha
Helix 22
AC4
B
233 237Right-handed 310
Helix 23
AC5
B
270 275Right-handed 310
Helix 24
AC6
B
277 284Right-handed alpha
Helix 25
AC7
B
304 308Right-handed 310
Helix 26
AC8
B
309 325Right-handed alpha
Helix 27
AC9
B
335 348Right-handed alpha
Helix 28
AD1
B
370 378Right-handed alpha
Helix 29
AD2
B
379 381Right-handed 310
Helix 30
AD3
B
382 387Right-handed alpha
Helix 31
AD4
B
391 400Right-handed alpha
Helix 32
AD5
B
400 409Right-handed alpha
Helix 33
AD6
B
411 415Right-handed 310
Helix 34
AD7
B
418 420Right-handed 310
Helix 35
AD8
B
421 426Right-handed alpha
Helix 36
AD9
B
443 458Right-handed alpha
Helix 37
AE1
B
459 465Right-handed alpha
Helix 38
AE2
B
468 478Right-handed alpha
Helix 39
AE3
B
500 505Right-handed 310
Helix 40
AE4
B
506 510Right-handed 310
Helix 41
AE5
B
525 530Right-handed alpha
Helix 42
AE6
B
530 545Right-handed alpha
Helix 43
AE7
C
233 237Right-handed 310
Helix 44
AE8
C
270 275Right-handed 310
Helix 45
AE9
C
276 284Right-handed alpha
Helix 46
AF1
C
304 308Right-handed 310
Helix 47
AF2
C
309 325Right-handed alpha
Helix 48
AF3
C
335 348Right-handed alpha
Helix 49
AF4
C
370 378Right-handed alpha
Helix 50
AF5
C
379 381Right-handed 310
Helix 51
AF6
C
382 387Right-handed alpha
Helix 52
AF7
C
391 399Right-handed alpha
Helix 53
AF8
C
400 409Right-handed alpha
Helix 54
AF9
C
411 415Right-handed 310
Helix 55
AG1
C
418 420Right-handed 310
Helix 56
AG2
C
421 426Right-handed alpha
Helix 57
AG3
C
443 455Right-handed alpha
Helix 58
AG4
C
459 465Right-handed alpha
Helix 59
AG5
C
468 478Right-handed alpha
Helix 60
AG6
C
500 505Right-handed 310
Helix 61
AG7
C
506 510Right-handed 310
Helix 62
AG8
C
525 530Right-handed alpha
Helix 63
AG9
C
530 546Right-handed alpha
Helix 64
AH1
D
233 237Right-handed 310
Helix 65
AH2
D
270 275Right-handed 310
Helix 66
AH3
D
277 284Right-handed alpha
Helix 67
AH4
D
304 308Right-handed 310
Helix 68
AH5
D
309 325Right-handed alpha
Helix 69
AH6
D
335 348Right-handed alpha
Helix 70
AH7
D
370 378Right-handed alpha
Helix 71
AH8
D
379 381Right-handed 310
Helix 72
AH9
D
382 387Right-handed alpha
Helix 73
AI1
D
391 399Right-handed alpha
Helix 74
AI2
D
400 409Right-handed alpha
Helix 75
AI3
D
411 415Right-handed 310
Helix 76
AI4
D
418 420Right-handed 310
Helix 77
AI5
D
421 426Right-handed alpha
Helix 78
AI6
D
443 456Right-handed alpha
Helix 79
AI7
D
459 465Right-handed alpha
Helix 80
AI8
D
468 478Right-handed alpha
Helix 81
AI9
D
500 505Right-handed 310
Helix 82
AJ1
D
506 510Right-handed 310
Helix 83
AJ2
D
525 530Right-handed alpha
Helix 84
AJ3
D
530 546Right-handed alpha
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There are 2 sheets in PDB entry 8QMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 519first strand
Strand 2
A
488 493parallel
Strand 3
A
352 358parallel
Strand 4
A
329 334parallel
Strand 5
A
260 264parallel
Strand 6
A
287 291parallel
Strand 7
A
248 255anti-parallel
Strand 8
A
238 245anti-parallel
Strand 9
C
238 245anti-parallel
Strand 10
C
248 255anti-parallel
Strand 11
C
287 291anti-parallel
Strand 12
C
260 264parallel
Strand 13
C
329 334parallel
Strand 14
C
352 358parallel
Strand 15
C
488 493parallel
Strand 16
C
514 519parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 519first strand
Strand 2
B
488 493parallel
Strand 3
B
352 358parallel
Strand 4
B
329 334parallel
Strand 5
B
260 264parallel
Strand 6
B
287 291parallel
Strand 7
B
248 255anti-parallel
Strand 8
B
238 245anti-parallel
Strand 9
D
238 245anti-parallel
Strand 10
D
248 255anti-parallel
Strand 11
D
287 291anti-parallel
Strand 12
D
260 264parallel
Strand 13
D
329 334parallel
Strand 14
D
352 358parallel
Strand 15
D
488 493parallel
Strand 16
D
514 519parallel
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