Analysis of interatomic Contacts of Structural Units in PDB entry:
8QN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QN8 entry

There are 8 chains in PDB entry 8QN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	GLU 233
C	SER 22	SER 1131
D	PHE 6	ALA 1283
E	SER 24	GLU 107
F	ASP 139	GLN 300
H	SER 2	LEU 721
J	TRP 82	ALA 107

There are157 helices in PDB entry 8QN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	182	186	Right-handed 310
Helix 6	AA6	A	203	224	Right-handed alpha
Helix 7	AA7	B	29	45	Right-handed alpha
Helix 8	AA8	B	58	60	Right-handed 310
Helix 9	AA9	B	72	82	Right-handed alpha
Helix 10	AB1	B	108	110	Right-handed 310
Helix 11	AB2	B	203	224	Right-handed alpha
Helix 12	AB3	C	45	56	Right-handed alpha
Helix 13	AB4	C	58	67	Right-handed alpha
Helix 14	AB5	C	75	85	Right-handed alpha
Helix 15	AB6	C	109	116	Right-handed alpha
Helix 16	AB7	C	225	232	Right-handed alpha
Helix 17	AB8	C	235	243	Right-handed alpha
Helix 18	AB9	C	246	255	Right-handed alpha
Helix 19	AC1	C	260	273	Right-handed alpha
Helix 20	AC2	C	279	292	Right-handed alpha
Helix 21	AC3	C	302	310	Right-handed alpha
Helix 22	AC4	C	325	342	Right-handed alpha
Helix 23	AC5	C	371	395	Right-handed alpha
Helix 24	AC6	C	404	409	Right-handed alpha
Helix 25	AC7	C	411	422	Right-handed alpha
Helix 26	AC8	C	435	444	Right-handed alpha
Helix 27	AC9	C	461	465	Right-handed 310
Helix 28	AD1	C	467	471	Right-handed 310
Helix 29	AD2	C	524	529	Right-handed alpha
Helix 30	AD3	C	573	578	Right-handed 310
Helix 31	AD4	C	579	584	Right-handed alpha
Helix 32	AD5	C	587	591	Right-handed 310
Helix 33	AD6	C	592	604	Right-handed alpha
Helix 34	AD7	C	621	630	Right-handed alpha
Helix 35	AD8	C	721	725	Right-handed 310
Helix 36	AD9	C	730	735	Right-handed alpha
Helix 37	AE1	C	847	849	Right-handed 310
Helix 38	AE2	C	909	918	Right-handed 310
Helix 39	AE3	C	919	933	Right-handed alpha
Helix 40	AE4	C	944	948	Right-handed 310
Helix 41	AE5	C	951	954	Right-handed 310
Helix 42	AE6	C	972	982	Right-handed alpha
Helix 43	AE7	C	1027	1031	Right-handed 310
Helix 44	AE8	C	1060	1071	Right-handed alpha
Helix 45	AE9	C	1072	1082	Right-handed alpha
Helix 46	AF1	C	1086	1099	Right-handed alpha
Helix 47	AF2	C	1109	1122	Right-handed alpha
Helix 48	AF3	D	16	23	Right-handed alpha
Helix 49	AF4	D	36	40	Right-handed 310
Helix 50	AF5	D	48	53	Right-handed alpha
Helix 51	AF6	D	86	90	Right-handed 310
Helix 52	AF7	D	103	108	Right-handed alpha
Helix 53	AF8	D	112	119	Right-handed alpha
Helix 54	AF9	D	121	130	Right-handed alpha
Helix 55	AG1	D	143	186	Right-handed alpha
Helix 56	AG2	D	190	229	Right-handed alpha
Helix 57	AG3	D	237	249	Right-handed alpha
Helix 58	AG4	D	256	267	Right-handed alpha
Helix 59	AG5	D	269	283	Right-handed alpha
Helix 60	AG6	D	286	288	Right-handed 310
Helix 61	AG7	D	289	306	Right-handed alpha
Helix 62	AG8	D	308	311	Right-handed 310
Helix 63	AG9	D	321	325	Right-handed 310
Helix 64	AH1	D	331	333	Right-handed 310
Helix 65	AH2	D	340	360	Right-handed alpha
Helix 66	AH3	D	363	383	Right-handed alpha
Helix 67	AH4	D	401	408	Right-handed alpha
Helix 68	AH5	D	445	452	Right-handed alpha
Helix 69	AH6	D	452	463	Right-handed alpha
Helix 70	AH7	D	468	479	Right-handed alpha
Helix 71	AH8	D	480	492	Right-handed alpha
Helix 72	AH9	D	505	507	Right-handed 310
Helix 73	AI1	D	525	527	Right-handed 310
Helix 74	AI2	D	528	533	Right-handed alpha
Helix 75	AI3	D	548	558	Right-handed alpha
Helix 76	AI4	D	560	564	Right-handed 310
Helix 77	AI5	D	579	590	Right-handed alpha
Helix 78	AI6	D	614	624	Right-handed alpha
Helix 79	AI7	D	643	651	Right-handed alpha
Helix 80	AI8	D	667	674	Right-handed alpha
Helix 81	AI9	D	688	703	Right-handed alpha
Helix 82	AJ1	D	704	725	Right-handed alpha
Helix 83	AJ2	D	740	761	Right-handed alpha
Helix 84	AJ3	D	765	792	Right-handed alpha
Helix 85	AJ4	D	796	804	Right-handed alpha
Helix 86	AJ5	D	809	818	Right-handed alpha
Helix 87	AJ6	D	844	881	Right-handed alpha
Helix 88	AJ7	D	914	919	Right-handed alpha
Helix 89	AJ8	D	944	955	Right-handed alpha
Helix 90	AJ9	D	975	979	Right-handed alpha
Helix 91	AK1	D	993	1004	Right-handed alpha
Helix 92	AK2	D	1005	1009	Right-handed 310
Helix 93	AK3	D	1020	1024	Right-handed 310
Helix 94	AK4	D	1028	1037	Right-handed alpha
Helix 95	AK5	D	1118	1127	Right-handed alpha
Helix 96	AK6	D	1127	1146	Right-handed alpha
Helix 97	AK7	D	1151	1161	Right-handed alpha
Helix 98	AK8	D	1184	1194	Right-handed alpha
Helix 99	AK9	D	1195	1198	Right-handed 310
Helix 100	AL1	D	1210	1217	Right-handed alpha
Helix 101	AL2	D	1220	1228	Right-handed alpha
Helix 102	AL3	D	1229	1241	Right-handed alpha
Helix 103	AL4	D	1249	1256	Right-handed alpha
Helix 104	AL5	D	1261	1264	Right-handed 310
Helix 105	AL6	D	1265	1270	Right-handed alpha
Helix 106	AL7	D	1276	1283	Right-handed alpha
Helix 107	AL8	E	30	34	Right-handed 310
Helix 108	AL9	E	36	43	Right-handed alpha
Helix 109	AM1	E	46	67	Right-handed alpha
Helix 110	AM2	E	87	98	Right-handed alpha
Helix 111	AM3	F	143	157	Right-handed alpha
Helix 112	AM4	F	161	165	Right-handed 310
Helix 113	AM5	F	166	174	Right-handed alpha
Helix 114	AM6	F	180	201	Right-handed alpha
Helix 115	AM7	F	213	246	Right-handed alpha
Helix 116	AM8	F	247	249	Right-handed 310
Helix 117	AM9	F	254	272	Right-handed alpha
Helix 118	AN1	F	274	278	Right-handed 310
Helix 119	AN2	F	280	298	Right-handed alpha
Helix 120	AN3	H	3	42	Right-handed alpha
Helix 121	AN4	H	45	67	Right-handed alpha
Helix 122	AN5	H	106	109	Right-handed 310
Helix 123	AN6	H	110	115	Right-handed alpha
Helix 124	AN7	H	156	163	Right-handed alpha
Helix 125	AN8	H	175	189	Right-handed alpha
Helix 126	AN9	H	204	220	Right-handed alpha
Helix 127	AO1	H	220	225	Right-handed alpha
Helix 128	AO2	H	236	246	Right-handed alpha
Helix 129	AO3	H	246	251	Right-handed alpha
Helix 130	AO4	H	258	262	Right-handed 310
Helix 131	AO5	H	275	281	Right-handed alpha
Helix 132	AO6	H	282	284	Right-handed 310
Helix 133	AO7	H	285	296	Right-handed alpha
Helix 134	AO8	H	316	331	Right-handed alpha
Helix 135	AO9	H	333	358	Right-handed alpha
Helix 136	AP1	H	369	382	Right-handed alpha
Helix 137	AP2	H	384	394	Right-handed alpha
Helix 138	AP3	H	399	411	Right-handed alpha
Helix 139	AP4	H	412	418	Right-handed alpha
Helix 140	AP5	H	420	424	Right-handed 310
Helix 141	AP6	H	434	447	Right-handed alpha
Helix 142	AP7	H	453	473	Right-handed alpha
Helix 143	AP8	H	488	493	Right-handed alpha
Helix 144	AP9	H	494	502	Right-handed alpha
Helix 145	AQ1	H	509	514	Right-handed alpha
Helix 146	AQ2	H	529	533	Right-handed 310
Helix 147	AQ3	H	534	545	Right-handed alpha
Helix 148	AQ4	H	555	559	Right-handed 310
Helix 149	AQ5	H	567	573	Right-handed alpha
Helix 150	AQ6	H	592	604	Right-handed alpha
Helix 151	AQ7	H	605	607	Right-handed 310
Helix 152	AQ8	H	632	646	Right-handed alpha
Helix 153	AQ9	H	680	687	Right-handed alpha
Helix 154	AR1	H	690	700	Right-handed alpha
Helix 155	AR2	H	716	721	Right-handed 310
Helix 156	AR3	J	83	89	Right-handed alpha
Helix 157	AR4	J	90	107	Right-handed alpha

There are 46 sheets in PDB entry 8QN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	179	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	161	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	138	149	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	182	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	213	217	anti-parallel
Strand 5	C	223	224	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	354	355	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	514	523	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	569	571	anti-parallel
Strand 4	C	532	533	parallel
Strand 5	C	549	553	anti-parallel
Strand 6	C	559	563	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	878	anti-parallel
Strand 4	C	883	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	708	714	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	836	845	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	798	anti-parallel
Strand 3	C	824	825	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1057	1059	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1124	1129	first strand
Strand 2	D	9	14	anti-parallel
Strand 3	D	1243	1244	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	661	666	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	899	first strand
Strand 2	D	958	961	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	901	903	first strand
Strand 2	D	909	911	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	928	929	first strand
Strand 2	D	935	937	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1082	first strand
Strand 2	D	1062	1068	anti-parallel
Strand 3	D	1052	1058	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1168	anti-parallel
Strand 3	D	1204	1207	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	91	first strand
Strand 2	H	99	103	anti-parallel
Strand 3	H	82	86	parallel
Strand 4	H	71	77	anti-parallel
Strand 5	H	123	131	anti-parallel
Strand 6	H	136	143	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	257	first strand
Strand 2	H	229	232	parallel
Strand 3	H	524	527	parallel
Strand 4	H	550	554	parallel
Strand 5	H	194	199	parallel
Strand 6	H	581	585	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	304	305	first strand
Strand 2	H	314	315	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	587	588	first strand
Strand 2	H	614	615	parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	624	627	first strand
Strand 2	H	702	710	parallel
Strand 3	H	673	679	parallel
Strand 4	H	651	654	parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 8QN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QN8