Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QNB entry

There is 1 chain in PDB entry 8QNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 10PRO 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8QNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 46Right-handed alpha
Helix 2
AA2
A
94 103Right-handed alpha
Helix 3
AA3
A
119 126Right-handed alpha
Helix 4
AA4
A
137 140Right-handed 310
Helix 5
AA5
A
162 170Right-handed alpha
Helix 6
AA6
A
200 215Right-handed alpha
Helix 7
AA7
A
251 264Right-handed alpha
Helix 8
AA8
A
286 290Right-handed 310
Helix 9
AA9
A
291 302Right-handed alpha
Helix 10
AB1
A
306 323Right-handed alpha
Helix 11
AB2
A
332 337Right-handed alpha
Helix 12
AB3
A
361 377Right-handed alpha
Helix 13
AB4
A
422 444Right-handed alpha
Helix 14
AB5
A
444 449Right-handed alpha
Helix 15
AB6
A
462 477Right-handed alpha
Helix 16
AB7
A
479 491Right-handed alpha
Helix 17
AB8
A
498 505Right-handed alpha
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There are 5 sheets in PDB entry 8QNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
20 21anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
67 70parallel
Strand 3
A
50 52parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
142 149anti-parallel
Strand 5
A
153 158anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
187 188anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 331first strand
Strand 2
A
191 199anti-parallel
Strand 3
A
229 236anti-parallel
Strand 4
A
217 222anti-parallel
Strand 5
A
385 391anti-parallel
Strand 6
A
407 417anti-parallel
Strand 7
A
344 355anti-parallel
Strand 8
A
451 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il