Analysis of interatomic Contacts of Structural Units in PDB entry:
8QND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QND entry

There are 4 chains in PDB entry 8QND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6LYS 308
B
 HIS 7LYS 308
C
 HIS 7LYS 308
D
 HIS 7LYS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8QND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
47 62Right-handed alpha
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
108 119Right-handed alpha
Helix 5
AA5
A
131 141Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
168 174Right-handed alpha
Helix 8
AA8
A
174 183Right-handed alpha
Helix 9
AA9
A
192 197Right-handed alpha
Helix 10
AB1
A
202 211Right-handed alpha
Helix 11
AB2
A
213 224Right-handed alpha
Helix 12
AB3
A
238 247Right-handed alpha
Helix 13
AB4
A
292 306Right-handed alpha
Helix 14
AB5
B
18 31Right-handed alpha
Helix 15
AB6
B
47 62Right-handed alpha
Helix 16
AB7
B
81 85Right-handed 310
Helix 17
AB8
B
108 119Right-handed alpha
Helix 18
AB9
B
131 141Right-handed alpha
Helix 19
AC1
B
142 146Right-handed 310
Helix 20
AC2
B
168 174Right-handed alpha
Helix 21
AC3
B
174 183Right-handed alpha
Helix 22
AC4
B
192 197Right-handed alpha
Helix 23
AC5
B
202 211Right-handed alpha
Helix 24
AC6
B
213 225Right-handed alpha
Helix 25
AC7
B
238 247Right-handed alpha
Helix 26
AC8
B
292 306Right-handed alpha
Helix 27
AC9
C
18 31Right-handed alpha
Helix 28
AD1
C
47 62Right-handed alpha
Helix 29
AD2
C
81 85Right-handed 310
Helix 30
AD3
C
108 119Right-handed alpha
Helix 31
AD4
C
131 141Right-handed alpha
Helix 32
AD5
C
142 146Right-handed 310
Helix 33
AD6
C
168 174Right-handed alpha
Helix 34
AD7
C
174 183Right-handed alpha
Helix 35
AD8
C
192 197Right-handed alpha
Helix 36
AD9
C
202 211Right-handed alpha
Helix 37
AE1
C
213 224Right-handed alpha
Helix 38
AE2
C
238 247Right-handed alpha
Helix 39
AE3
C
292 306Right-handed alpha
Helix 40
AE4
D
18 31Right-handed alpha
Helix 41
AE5
D
47 62Right-handed alpha
Helix 42
AE6
D
108 119Right-handed alpha
Helix 43
AE7
D
131 141Right-handed alpha
Helix 44
AE8
D
142 146Right-handed 310
Helix 45
AE9
D
168 174Right-handed alpha
Helix 46
AF1
D
174 183Right-handed alpha
Helix 47
AF2
D
192 197Right-handed alpha
Helix 48
AF3
D
202 211Right-handed alpha
Helix 49
AF4
D
213 224Right-handed alpha
Helix 50
AF5
D
238 247Right-handed alpha
Helix 51
AF6
D
292 306Right-handed alpha
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There are 12 sheets in PDB entry 8QND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
34 41parallel
Strand 3
A
9 15parallel
Strand 4
A
123 127parallel
Strand 5
A
148 154parallel
Strand 6
A
188 191parallel
Strand 7
A
285 291parallel
Strand 8
A
251 256anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
270 272anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
34 41parallel
Strand 3
B
9 15parallel
Strand 4
B
123 127parallel
Strand 5
B
148 154parallel
Strand 6
B
188 191parallel
Strand 7
B
285 291parallel
Strand 8
B
251 256anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
234 235anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
270 272anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 70first strand
Strand 2
C
34 41parallel
Strand 3
C
9 15parallel
Strand 4
C
123 127parallel
Strand 5
C
148 154parallel
Strand 6
C
188 191parallel
Strand 7
C
285 291parallel
Strand 8
C
251 256anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 201first strand
Strand 2
C
234 235anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 260first strand
Strand 2
C
270 272anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 70first strand
Strand 2
D
34 41parallel
Strand 3
D
9 15parallel
Strand 4
D
123 127parallel
Strand 5
D
148 154parallel
Strand 6
D
188 191parallel
Strand 7
D
285 291parallel
Strand 8
D
251 256anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 201first strand
Strand 2
D
234 235anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
258 260first strand
Strand 2
D
270 272anti-parallel
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