Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QNF entry

There is 1 chain in PDB entry 8QNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 80ALA 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8QNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 108Right-handed alpha
Helix 2
AA2
A
130 145Right-handed alpha
Helix 3
AA3
A
146 148Right-handed 310
Helix 4
AA4
A
179 192Right-handed alpha
Helix 5
AA5
A
223 226Right-handed 310
Helix 6
AA6
A
227 228Right-handed 310
Helix 7
AA7
A
229 247Right-handed alpha
Helix 8
AA8
A
259 271Right-handed alpha
Helix 9
AA9
A
272 287Right-handed alpha
Helix 10
AB1
A
318 332Right-handed alpha
Helix 11
AB2
A
335 353Right-handed alpha
Helix 12
AB3
A
368 372Right-handed 310
Helix 13
AB4
A
393 411Right-handed alpha
Helix 14
AB5
A
415 424Right-handed alpha
Helix 15
AB6
A
443 446Right-handed 310
Helix 16
AB7
A
493 514Right-handed alpha
Helix 17
AB8
A
518 522Right-handed 310
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There are 5 sheets in PDB entry 8QNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
203 209parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
121 125anti-parallel
Strand 5
A
459 460anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
158 163anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 314first strand
Strand 2
A
480 488anti-parallel
Strand 3
A
470 477anti-parallel
Strand 4
A
437 442parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 364first strand
Strand 2
A
379 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 451first strand
Strand 2
A
454 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il