Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QNH entry

There is 1 chain in PDB entry 8QNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37ASP 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 8QNH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 61Right-handed alpha
Helix 2
AA2
A
73 92Right-handed alpha
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
104 129Right-handed alpha
Helix 5
AA5
A
130 133Right-handed 310
Helix 6
AA6
A
137 161Right-handed alpha
Helix 7
AA7
A
162 165Right-handed 310
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
175 187Right-handed alpha
Helix 10
AB1
A
194 203Right-handed alpha
Helix 11
AB2
A
209 221Right-handed alpha
Helix 12
AB3
A
230 240Right-handed alpha
Helix 13
AB4
A
242 244Right-handed 310
Helix 14
AB5
A
245 254Right-handed alpha
Helix 15
AB6
A
265 275Right-handed alpha
Helix 16
AB7
A
315 326Right-handed alpha
Helix 17
AB8
A
341 346Right-handed 310
Helix 18
AB9
A
356 366Right-handed alpha
Helix 19
AC1
A
393 404Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8QNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
282 287parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
282 287parallel
Strand 3
A
331 332parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
383 386anti-parallel
Strand 3
A
417 420anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il