Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QNK entry

There are 4 chains in PDB entry 8QNK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 9	LEU 384
B	ASN 10	LEU 384
C	ASN 10	LEU 384
D	ASN 10	LEU 384

There are 64 helices in PDB entry 8QNK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	14	Right-handed 310
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	43	54	Right-handed alpha
Helix 4	AA4	A	82	99	Right-handed alpha
Helix 5	AA5	A	115	123	Right-handed 310
Helix 6	AA6	A	156	177	Right-handed alpha
Helix 7	AA7	A	190	197	Right-handed alpha
Helix 8	AA8	A	210	215	Right-handed alpha
Helix 9	AA9	A	215	230	Right-handed alpha
Helix 10	AB1	A	243	247	Right-handed 310
Helix 11	AB2	A	251	271	Right-handed alpha
Helix 12	AB3	A	297	312	Right-handed alpha
Helix 13	AB4	A	323	333	Right-handed alpha
Helix 14	AB5	A	342	348	Right-handed alpha
Helix 15	AB6	A	350	358	Right-handed alpha
Helix 16	AB7	A	365	369	Right-handed 310
Helix 17	AB8	B	10	14	Right-handed 310
Helix 18	AB9	B	37	41	Right-handed 310
Helix 19	AC1	B	43	54	Right-handed alpha
Helix 20	AC2	B	82	98	Right-handed alpha
Helix 21	AC3	B	115	123	Right-handed 310
Helix 22	AC4	B	156	178	Right-handed alpha
Helix 23	AC5	B	190	197	Right-handed alpha
Helix 24	AC6	B	210	215	Right-handed alpha
Helix 25	AC7	B	215	230	Right-handed alpha
Helix 26	AC8	B	251	271	Right-handed alpha
Helix 27	AC9	B	284	290	Right-handed 310
Helix 28	AD1	B	303	312	Right-handed alpha
Helix 29	AD2	B	323	333	Right-handed alpha
Helix 30	AD3	B	342	348	Right-handed alpha
Helix 31	AD4	B	350	358	Right-handed alpha
Helix 32	AD5	B	365	369	Right-handed 310
Helix 33	AD6	C	10	14	Right-handed 310
Helix 34	AD7	C	37	41	Right-handed 310
Helix 35	AD8	C	43	54	Right-handed alpha
Helix 36	AD9	C	82	99	Right-handed alpha
Helix 37	AE1	C	115	123	Right-handed 310
Helix 38	AE2	C	156	178	Right-handed alpha
Helix 39	AE3	C	190	197	Right-handed alpha
Helix 40	AE4	C	210	215	Right-handed alpha
Helix 41	AE5	C	215	230	Right-handed alpha
Helix 42	AE6	C	243	247	Right-handed 310
Helix 43	AE7	C	251	271	Right-handed alpha
Helix 44	AE8	C	302	312	Right-handed alpha
Helix 45	AE9	C	323	333	Right-handed alpha
Helix 46	AF1	C	342	348	Right-handed alpha
Helix 47	AF2	C	350	358	Right-handed alpha
Helix 48	AF3	C	365	369	Right-handed 310
Helix 49	AF4	D	10	14	Right-handed 310
Helix 50	AF5	D	37	41	Right-handed 310
Helix 51	AF6	D	43	54	Right-handed alpha
Helix 52	AF7	D	82	98	Right-handed alpha
Helix 53	AF8	D	115	123	Right-handed 310
Helix 54	AF9	D	156	177	Right-handed alpha
Helix 55	AG1	D	190	197	Right-handed alpha
Helix 56	AG2	D	210	215	Right-handed alpha
Helix 57	AG3	D	215	230	Right-handed alpha
Helix 58	AG4	D	243	247	Right-handed 310
Helix 59	AG5	D	251	271	Right-handed alpha
Helix 60	AG6	D	304	312	Right-handed alpha
Helix 61	AG7	D	323	333	Right-handed alpha
Helix 62	AG8	D	342	348	Right-handed alpha
Helix 63	AG9	D	350	357	Right-handed alpha
Helix 64	AH1	D	365	369	Right-handed 310

There are 16 sheets in PDB entry 8QNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	21	23	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	59	65	parallel
Strand 3	A	102	107	parallel
Strand 4	A	181	186	parallel
Strand 5	A	234	238	parallel
Strand 6	A	276	280	parallel
Strand 7	A	316	319	parallel
Strand 8	A	338	341	parallel
Strand 9	A	27	29	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	153	154	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	146	147	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	21	23	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	102	108	parallel
Strand 3	B	181	186	parallel
Strand 4	B	234	238	parallel
Strand 5	B	276	280	parallel
Strand 6	B	316	319	parallel
Strand 7	B	338	341	parallel
Strand 8	B	27	29	parallel
Strand 9	B	59	61	parallel
Strand 10	B	102	108	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	153	154	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	146	148	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	18	first strand
Strand 2	C	21	23	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	102	108	parallel
Strand 3	C	181	186	parallel
Strand 4	C	234	238	parallel
Strand 5	C	276	280	parallel
Strand 6	C	316	319	parallel
Strand 7	C	338	341	parallel
Strand 8	C	27	29	parallel
Strand 9	C	59	61	parallel
Strand 10	C	102	108	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	153	154	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	146	147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	18	first strand
Strand 2	D	21	23	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	59	66	parallel
Strand 3	D	102	108	parallel
Strand 4	D	181	186	parallel
Strand 5	D	234	238	parallel
Strand 6	D	276	280	parallel
Strand 7	D	316	319	parallel
Strand 8	D	338	341	parallel
Strand 9	D	27	29	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	D	153	154	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	140	first strand
Strand 2	D	146	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QNK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNK