Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QNL entry

There are 6 chains in PDB entry 8QNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -4VAL 122
B
 GLU 7ARG 119
C
 PRO 1PRO 250
D
 ASP -4VAL 122
E
 GLU 7ARG 119
F
 PRO 1PRO 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8QNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 3Right-handed alpha
Helix 2
AA2
A
10 26Right-handed alpha
Helix 3
AA3
A
29 38Right-handed alpha
Helix 4
AA4
A
40 48Right-handed alpha
Helix 5
AA5
A
56 76Right-handed alpha
Helix 6
AA6
A
79 89Right-handed alpha
Helix 7
AA7
A
97 102Right-handed alpha
Helix 8
AA8
A
104 118Right-handed alpha
Helix 9
AA9
B
10 27Right-handed alpha
Helix 10
AB1
B
29 38Right-handed alpha
Helix 11
AB2
B
40 45Right-handed alpha
Helix 12
AB3
B
56 76Right-handed alpha
Helix 13
AB4
B
79 89Right-handed alpha
Helix 14
AB5
B
97 102Right-handed alpha
Helix 15
AB6
B
104 119Right-handed alpha
Helix 16
AB7
C
2 7Right-handed alpha
Helix 17
AB8
C
8 14Right-handed 310
Helix 18
AB9
C
28 35Right-handed alpha
Helix 19
AC1
C
39 53Right-handed alpha
Helix 20
AC2
C
65 70Right-handed alpha
Helix 21
AC3
C
71 73Right-handed 310
Helix 22
AC4
C
97 116Right-handed alpha
Helix 23
AC5
C
120 124Right-handed 310
Helix 24
AC6
C
146 151Right-handed alpha
Helix 25
AC7
C
152 157Right-handed alpha
Helix 26
AC8
C
162 175Right-handed alpha
Helix 27
AC9
C
198 202Right-handed 310
Helix 28
AD1
C
239 241Right-handed 310
Helix 29
AD2
D
-3 6Right-handed alpha
Helix 30
AD3
D
10 27Right-handed alpha
Helix 31
AD4
D
29 38Right-handed alpha
Helix 32
AD5
D
40 46Right-handed alpha
Helix 33
AD6
D
46 51Right-handed alpha
Helix 34
AD7
D
56 76Right-handed alpha
Helix 35
AD8
D
79 89Right-handed alpha
Helix 36
AD9
D
97 103Right-handed alpha
Helix 37
AE1
D
104 118Right-handed alpha
Helix 38
AE2
E
10 27Right-handed alpha
Helix 39
AE3
E
29 38Right-handed alpha
Helix 40
AE4
E
40 50Right-handed alpha
Helix 41
AE5
E
56 76Right-handed alpha
Helix 42
AE6
E
79 88Right-handed alpha
Helix 43
AE7
E
97 102Right-handed alpha
Helix 44
AE8
E
104 118Right-handed alpha
Helix 45
AE9
F
3 8Right-handed alpha
Helix 46
AF1
F
9 13Right-handed 310
Helix 47
AF2
F
28 35Right-handed alpha
Helix 48
AF3
F
39 53Right-handed alpha
Helix 49
AF4
F
58 62Right-handed 310
Helix 50
AF5
F
65 70Right-handed alpha
Helix 51
AF6
F
71 73Right-handed 310
Helix 52
AF7
F
97 116Right-handed alpha
Helix 53
AF8
F
146 151Right-handed alpha
Helix 54
AF9
F
152 157Right-handed alpha
Helix 55
AG1
F
162 175Right-handed alpha
Helix 56
AG2
F
198 202Right-handed 310
Helix 57
AG3
F
239 241Right-handed 310
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There are 2 sheets in PDB entry 8QNL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 237first strand
Strand 2
C
221 226anti-parallel
Strand 3
C
208 217anti-parallel
Strand 4
C
125 143anti-parallel
Strand 5
C
179 183parallel
Strand 6
C
192 196anti-parallel
Strand 7
C
92 95anti-parallel
Strand 8
C
15 26anti-parallel
Strand 9
C
125 143anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
234 237first strand
Strand 2
F
221 226anti-parallel
Strand 3
F
208 218anti-parallel
Strand 4
F
124 143anti-parallel
Strand 5
F
179 183parallel
Strand 6
F
192 196anti-parallel
Strand 7
F
92 95anti-parallel
Strand 8
F
15 26anti-parallel
Strand 9
F
124 143anti-parallel
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