Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QNO entry

There are 2 chains in PDB entry 8QNO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 421
B
 MET 1THR 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8QNO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 13Right-handed 310
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
29 43Right-handed alpha
Helix 4
AA4
A
57 70Right-handed alpha
Helix 5
AA5
A
85 95Right-handed alpha
Helix 6
AA6
A
106 119Right-handed alpha
Helix 7
AA7
A
130 140Right-handed alpha
Helix 8
AA8
A
141 147Right-handed 310
Helix 9
AA9
A
154 167Right-handed alpha
Helix 10
AB1
A
180 185Right-handed alpha
Helix 11
AB2
A
189 205Right-handed alpha
Helix 12
AB3
A
219 232Right-handed alpha
Helix 13
AB4
A
242 252Right-handed alpha
Helix 14
AB5
A
258 266Right-handed alpha
Helix 15
AB6
A
280 287Right-handed alpha
Helix 16
AB7
A
304 311Right-handed alpha
Helix 17
AB8
A
338 340Right-handed 310
Helix 18
AB9
A
341 346Right-handed alpha
Helix 19
AC1
A
351 373Right-handed alpha
Helix 20
AC2
A
374 376Right-handed 310
Helix 21
AC3
A
384 399Right-handed alpha
Helix 22
AC4
A
407 415Right-handed alpha
Helix 23
AC5
B
11 13Right-handed 310
Helix 24
AC6
B
14 27Right-handed alpha
Helix 25
AC7
B
29 43Right-handed alpha
Helix 26
AC8
B
57 70Right-handed alpha
Helix 27
AC9
B
85 95Right-handed alpha
Helix 28
AD1
B
106 119Right-handed alpha
Helix 29
AD2
B
130 140Right-handed alpha
Helix 30
AD3
B
141 147Right-handed 310
Helix 31
AD4
B
154 167Right-handed alpha
Helix 32
AD5
B
180 185Right-handed alpha
Helix 33
AD6
B
189 205Right-handed alpha
Helix 34
AD7
B
219 232Right-handed alpha
Helix 35
AD8
B
242 252Right-handed alpha
Helix 36
AD9
B
258 266Right-handed alpha
Helix 37
AE1
B
280 287Right-handed alpha
Helix 38
AE2
B
304 311Right-handed alpha
Helix 39
AE3
B
338 340Right-handed 310
Helix 40
AE4
B
341 346Right-handed alpha
Helix 41
AE5
B
351 373Right-handed alpha
Helix 42
AE6
B
374 376Right-handed 310
Helix 43
AE7
B
384 399Right-handed alpha
Helix 44
AE8
B
407 415Right-handed alpha
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There are 6 sheets in PDB entry 8QNO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
8 9anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
73 78parallel
Strand 3
A
49 54parallel
Strand 4
A
124 127parallel
Strand 5
A
149 152parallel
Strand 6
A
174 176parallel
Strand 7
A
380 381parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
235 239parallel
Strand 3
A
212 216parallel
Strand 4
A
268 271parallel
Strand 5
A
292 295parallel
Strand 6
A
332 336parallel
Strand 7
A
322 327anti-parallel
Strand 8
A
312 319anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
8 9anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
73 78parallel
Strand 3
B
49 54parallel
Strand 4
B
124 127parallel
Strand 5
B
149 152parallel
Strand 6
B
174 176parallel
Strand 7
B
380 381parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
235 239parallel
Strand 3
B
212 216parallel
Strand 4
B
268 271parallel
Strand 5
B
292 295parallel
Strand 6
B
332 336parallel
Strand 7
B
322 327anti-parallel
Strand 8
B
312 319anti-parallel
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