Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QNS entry

There are 3 chains in PDB entry 8QNS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 125	GLY 617
D	ILE 125	ASP 612
G	ALA 127	VAL 580

There are 55 helices in PDB entry 8QNS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	139	153	Right-handed alpha
Helix 2	AA2	A	171	176	Right-handed 310
Helix 3	AA3	A	185	190	Right-handed alpha
Helix 4	AA4	A	206	210	Right-handed 310
Helix 5	AA5	A	266	272	Right-handed alpha
Helix 6	AA6	A	273	279	Right-handed alpha
Helix 7	AA7	A	285	296	Right-handed alpha
Helix 8	AA8	A	308	326	Right-handed alpha
Helix 9	AA9	A	344	360	Right-handed alpha
Helix 10	AB1	A	404	410	Right-handed alpha
Helix 11	AB2	A	453	470	Right-handed alpha
Helix 12	AB3	A	583	594	Right-handed alpha
Helix 13	AB4	A	599	606	Right-handed alpha
Helix 14	AB5	D	139	153	Right-handed alpha
Helix 15	AB6	D	171	181	Right-handed 310
Helix 16	AB7	D	185	190	Right-handed alpha
Helix 17	AB8	D	206	210	Right-handed 310
Helix 18	AB9	D	266	272	Right-handed alpha
Helix 19	AC1	D	273	279	Right-handed alpha
Helix 20	AC2	D	285	296	Right-handed alpha
Helix 21	AC3	D	308	326	Right-handed alpha
Helix 22	AC4	D	344	357	Right-handed alpha
Helix 23	AC5	D	404	410	Right-handed alpha
Helix 24	AC6	D	453	470	Right-handed alpha
Helix 25	AC7	D	583	594	Right-handed alpha
Helix 26	AC8	D	599	605	Right-handed alpha
Helix 27	AC9	D	606	608	Right-handed 310
Helix 28	AD1	G	139	153	Right-handed alpha
Helix 29	AD2	G	171	181	Right-handed 310
Helix 30	AD3	G	185	190	Right-handed alpha
Helix 31	AD4	G	206	210	Right-handed 310
Helix 32	AD5	G	266	272	Right-handed alpha
Helix 33	AD6	G	273	279	Right-handed alpha
Helix 34	AD7	G	285	297	Right-handed alpha
Helix 35	AD8	G	308	326	Right-handed alpha
Helix 36	AD9	G	344	357	Right-handed alpha
Helix 37	AE1	G	404	410	Right-handed alpha
Helix 38	AE2	G	453	470	Right-handed alpha
Helix 39	AE3	G	583	594	Right-handed alpha
Helix 40	AE4	G	599	606	Right-handed alpha
Helix 41	AE5	J	139	153	Right-handed alpha
Helix 42	AE6	J	171	175	Right-handed 310
Helix 43	AE7	J	176	180	Right-handed 310
Helix 44	AE8	J	185	190	Right-handed alpha
Helix 45	AE9	J	206	210	Right-handed 310
Helix 46	AF1	J	266	272	Right-handed alpha
Helix 47	AF2	J	273	279	Right-handed alpha
Helix 48	AF3	J	285	297	Right-handed alpha
Helix 49	AF4	J	308	326	Right-handed alpha
Helix 50	AF5	J	344	357	Right-handed alpha
Helix 51	AF6	J	404	410	Right-handed alpha
Helix 52	AF7	J	453	470	Right-handed alpha
Helix 53	AF8	J	583	594	Right-handed alpha
Helix 54	AF9	J	599	605	Right-handed alpha
Helix 55	AG1	J	606	608	Right-handed 310

There are 32 sheets in PDB entry 8QNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	157	162	parallel
Strand 3	A	130	136	parallel
Strand 4	A	249	257	parallel
Strand 5	A	241	244	anti-parallel
Strand 6	A	232	236	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	157	162	parallel
Strand 3	A	130	136	parallel
Strand 4	A	249	257	parallel
Strand 5	A	432	434	parallel
Strand 6	A	427	429	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	199	201	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	399	401	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	392	395	parallel
Strand 3	A	301	305	parallel
Strand 4	A	328	333	parallel
Strand 5	A	361	364	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	374	first strand
Strand 2	A	377	382	anti-parallel
Strand 3	A	387	390	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	439	443	parallel
Strand 3	A	447	450	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	485	first strand
Strand 2	A	489	495	anti-parallel
Strand 3	A	572	578	anti-parallel
Strand 4	A	562	567	anti-parallel
Strand 5	A	503	508	anti-parallel
Strand 6	M	10	15	parallel
Strand 7	M	4	7	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	157	162	parallel
Strand 3	D	130	136	parallel
Strand 4	D	249	257	parallel
Strand 5	D	241	244	anti-parallel
Strand 6	D	232	236	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	157	162	parallel
Strand 3	D	130	136	parallel
Strand 4	D	249	257	parallel
Strand 5	D	432	434	parallel
Strand 6	D	427	429	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	199	201	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	263	first strand
Strand 2	D	399	401	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	392	395	parallel
Strand 3	D	301	305	parallel
Strand 4	D	328	333	parallel
Strand 5	D	361	364	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	374	first strand
Strand 2	D	377	382	anti-parallel
Strand 3	D	387	390	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	421	first strand
Strand 2	D	439	443	parallel
Strand 3	D	447	450	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	480	485	first strand
Strand 2	D	489	495	anti-parallel
Strand 3	D	572	578	anti-parallel
Strand 4	D	562	567	anti-parallel
Strand 5	D	503	507	anti-parallel
Strand 6	O	10	14	parallel
Strand 7	O	4	7	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	228	first strand
Strand 2	G	157	162	parallel
Strand 3	G	130	136	parallel
Strand 4	G	249	257	parallel
Strand 5	G	241	244	anti-parallel
Strand 6	G	232	236	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	228	first strand
Strand 2	G	157	162	parallel
Strand 3	G	130	136	parallel
Strand 4	G	249	257	parallel
Strand 5	G	432	434	parallel
Strand 6	G	427	429	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	193	first strand
Strand 2	G	199	201	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	261	263	first strand
Strand 2	G	399	401	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	280	282	first strand
Strand 2	G	392	395	parallel
Strand 3	G	301	305	parallel
Strand 4	G	328	332	parallel
Strand 5	G	361	363	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	368	374	first strand
Strand 2	G	377	382	anti-parallel
Strand 3	G	387	390	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	420	421	first strand
Strand 2	G	439	443	parallel
Strand 3	G	447	450	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	480	485	first strand
Strand 2	G	489	495	anti-parallel
Strand 3	G	572	578	anti-parallel
Strand 4	G	562	567	anti-parallel
Strand 5	G	503	508	anti-parallel
Strand 6	N	10	15	parallel
Strand 7	N	4	7	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	223	228	first strand
Strand 2	J	157	162	parallel
Strand 3	J	130	136	parallel
Strand 4	J	249	257	parallel
Strand 5	J	241	244	anti-parallel
Strand 6	J	232	236	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	223	228	first strand
Strand 2	J	157	162	parallel
Strand 3	J	130	136	parallel
Strand 4	J	249	257	parallel
Strand 5	J	432	434	parallel
Strand 6	J	427	429	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	191	193	first strand
Strand 2	J	199	201	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	261	263	first strand
Strand 2	J	399	401	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	280	282	first strand
Strand 2	J	392	395	parallel
Strand 3	J	301	305	parallel
Strand 4	J	328	333	parallel
Strand 5	J	361	364	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	368	374	first strand
Strand 2	J	377	382	anti-parallel
Strand 3	J	387	390	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	420	421	first strand
Strand 2	J	439	443	parallel
Strand 3	J	447	450	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	480	485	first strand
Strand 2	J	489	495	anti-parallel
Strand 3	J	572	578	anti-parallel
Strand 4	J	562	567	anti-parallel
Strand 5	J	503	507	anti-parallel
Strand 6	P	10	13	parallel
Strand 7	P	5	7	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QNS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNS