Analysis of interatomic Contacts of Structural Units in PDB entry:
8QNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QNW entry

There is 1 chain in PDB entry 8QNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9GLN 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8QNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
82 99Right-handed alpha
Helix 5
AA5
A
115 123Right-handed 310
Helix 6
AA6
A
156 177Right-handed alpha
Helix 7
AA7
A
190 197Right-handed alpha
Helix 8
AA8
A
210 215Right-handed alpha
Helix 9
AA9
A
215 230Right-handed alpha
Helix 10
AB1
A
251 271Right-handed alpha
Helix 11
AB2
A
289 303Right-handed alpha
Helix 12
AB3
A
314 324Right-handed alpha
Helix 13
AB4
A
333 339Right-handed alpha
Helix 14
AB5
A
341 349Right-handed alpha
Helix 15
AB6
A
356 360Right-handed 310
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There are 4 sheets in PDB entry 8QNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 23anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
102 108parallel
Strand 3
A
181 186parallel
Strand 4
A
234 238parallel
Strand 5
A
276 280parallel
Strand 6
A
307 310parallel
Strand 7
A
329 332parallel
Strand 8
A
27 29parallel
Strand 9
A
59 61parallel
Strand 10
A
102 108parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
153 154parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
146 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il