Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QOE entry

There are 2 chains in PDB entry 8QOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 10GLN 577
A
 SER 10GLN 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8QOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 21Right-handed alpha
Helix 2
AA2
B
26 44Right-handed alpha
Helix 3
AA3
B
45 56Right-handed alpha
Helix 4
AA4
B
64 109Right-handed alpha
Helix 5
AA5
B
113 117Right-handed alpha
Helix 6
AA6
B
120 140Right-handed alpha
Helix 7
AA7
B
140 162Right-handed alpha
Helix 8
AB1
B
164 210Right-handed alpha
Helix 9
AB2
B
213 219Right-handed alpha
Helix 10
AB3
B
222 274Right-handed alpha
Helix 11
AB4
B
280 295Right-handed alpha
Helix 12
AB5
B
296 322Right-handed alpha
Helix 13
AB6
B
380 388Right-handed alpha
Helix 14
AB7
B
410 416Right-handed alpha
Helix 15
AB8
B
432 436Right-handed 310
Helix 16
AC1
B
446 454Right-handed alpha
Helix 17
AC2
B
457 462Right-handed alpha
Helix 18
AC3
B
481 495Right-handed alpha
Helix 19
AC4
B
514 525Right-handed alpha
Helix 20
AC5
B
537 540Right-handed 310
Helix 21
AC6
B
560 566Right-handed alpha
Helix 22
AC7
B
572 577Right-handed alpha
Helix 23
AC8
A
12 21Right-handed alpha
Helix 24
AC9
A
26 44Right-handed alpha
Helix 25
AD1
A
45 56Right-handed alpha
Helix 26
AD2
A
64 109Right-handed alpha
Helix 27
AD3
A
113 117Right-handed alpha
Helix 28
AD4
A
120 140Right-handed alpha
Helix 29
AD5
A
140 162Right-handed alpha
Helix 30
AD6
A
164 210Right-handed alpha
Helix 31
AD7
A
213 219Right-handed alpha
Helix 32
AE1
A
222 274Right-handed alpha
Helix 33
AE2
A
280 295Right-handed alpha
Helix 34
AE3
A
296 322Right-handed alpha
Helix 35
AE4
A
380 388Right-handed alpha
Helix 36
AE5
A
410 416Right-handed alpha
Helix 37
AE6
A
432 436Right-handed 310
Helix 38
AE7
A
446 454Right-handed alpha
Helix 39
AE8
A
457 462Right-handed alpha
Helix 40
AF1
A
481 495Right-handed alpha
Helix 41
AF2
A
514 525Right-handed alpha
Helix 42
AF3
A
537 540Right-handed 310
Helix 43
AF4
A
560 566Right-handed alpha
Helix 44
AF5
A
572 577Right-handed alpha
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There are 4 sheets in PDB entry 8QOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 364first strand
Strand 2
B
341 348anti-parallel
Strand 3
B
397 400anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 421first strand
Strand 2
B
499 503parallel
Strand 3
B
529 533parallel
Strand 4
B
368 373parallel
Strand 5
B
545 549parallel
Strand 6
B
554 558first strand
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 364first strand
Strand 2
A
341 348anti-parallel
Strand 3
A
397 400anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
499 503parallel
Strand 3
A
529 533parallel
Strand 4
A
368 373parallel
Strand 5
A
545 549parallel
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