Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QOF entry

There are 8 chains in PDB entry 8QOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PRO 54	CYS 553
F	PRO 54	CYS 553
D	HIS 4	SER 68
H	HIS 4	SER 68
A	PRO 37	ALA 213
E	PRO 37	ALA 213
G	TYR 7	ASN 561
C	TYR 7	ASN 561

There are105 helices in PDB entry 8QOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	54	72	Right-handed alpha
Helix 2	AA2	B	89	91	Right-handed 310
Helix 3	AA3	B	92	99	Right-handed alpha
Helix 4	AA4	B	115	120	Right-handed alpha
Helix 5	AA5	B	161	176	Right-handed alpha
Helix 6	AA6	B	191	204	Right-handed alpha
Helix 7	AA7	B	213	216	Right-handed 310
Helix 8	AA8	B	217	222	Right-handed alpha
Helix 9	AA9	B	223	226	Right-handed 310
Helix 10	AB1	B	239	249	Right-handed alpha
Helix 11	AB2	B	260	279	Right-handed alpha
Helix 12	AB3	B	302	314	Right-handed alpha
Helix 13	AB4	B	334	339	Right-handed alpha
Helix 14	AB5	B	342	347	Right-handed alpha
Helix 15	AB6	B	368	379	Right-handed alpha
Helix 16	AB7	B	379	384	Right-handed alpha
Helix 17	AB8	B	389	406	Right-handed alpha
Helix 18	AB9	B	407	426	Right-handed alpha
Helix 19	AC1	B	450	458	Right-handed alpha
Helix 20	AC2	B	461	476	Right-handed alpha
Helix 21	AC3	B	482	504	Right-handed alpha
Helix 22	AC4	B	534	553	Right-handed alpha
Helix 23	AC5	F	55	72	Right-handed alpha
Helix 24	AC6	F	89	91	Right-handed 310
Helix 25	AC7	F	92	100	Right-handed alpha
Helix 26	AC8	F	115	120	Right-handed alpha
Helix 27	AC9	F	161	176	Right-handed alpha
Helix 28	AD1	F	191	204	Right-handed alpha
Helix 29	AD2	F	217	222	Right-handed alpha
Helix 30	AD3	F	223	226	Right-handed 310
Helix 31	AD4	F	239	250	Right-handed alpha
Helix 32	AD5	F	260	279	Right-handed alpha
Helix 33	AD6	F	302	313	Right-handed alpha
Helix 34	AD7	F	334	339	Right-handed alpha
Helix 35	AD8	F	342	347	Right-handed alpha
Helix 36	AD9	F	368	379	Right-handed alpha
Helix 37	AE1	F	379	384	Right-handed alpha
Helix 38	AE2	F	389	406	Right-handed alpha
Helix 39	AE3	F	407	426	Right-handed alpha
Helix 40	AE4	F	450	458	Right-handed alpha
Helix 41	AE5	F	461	476	Right-handed alpha
Helix 42	AE6	F	482	504	Right-handed alpha
Helix 43	AE7	F	534	553	Right-handed alpha
Helix 44	AE8	D	29	42	Right-handed alpha
Helix 45	AE9	D	50	58	Right-handed 310
Helix 46	AF1	D	59	66	Right-handed alpha
Helix 47	AF2	H	29	42	Right-handed alpha
Helix 48	AF3	H	50	52	Right-handed 310
Helix 49	AF4	H	53	58	Right-handed alpha
Helix 50	AF5	H	59	66	Right-handed alpha
Helix 51	AF6	A	57	63	Right-handed alpha
Helix 52	AF7	A	82	99	Right-handed alpha
Helix 53	AF8	A	101	122	Right-handed alpha
Helix 54	AF9	A	140	145	Right-handed alpha
Helix 55	AG1	A	152	170	Right-handed alpha
Helix 56	AG2	A	171	173	Right-handed 310
Helix 57	AG3	A	176	192	Right-handed alpha
Helix 58	AG4	E	57	63	Right-handed alpha
Helix 59	AG5	E	72	76	Right-handed 310
Helix 60	AG6	E	81	99	Right-handed alpha
Helix 61	AG7	E	101	122	Right-handed alpha
Helix 62	AG8	E	140	145	Right-handed alpha
Helix 63	AG9	E	152	170	Right-handed alpha
Helix 64	AH1	E	171	173	Right-handed 310
Helix 65	AH2	E	176	192	Right-handed alpha
Helix 66	AH3	G	19	28	Right-handed alpha
Helix 67	AH4	G	57	86	Right-handed alpha
Helix 68	AH5	G	105	107	Right-handed 310
Helix 69	AH6	G	108	114	Right-handed alpha
Helix 70	AH7	G	115	122	Right-handed 310
Helix 71	AH8	G	173	186	Right-handed alpha
Helix 72	AH9	G	200	215	Right-handed alpha
Helix 73	AI1	G	224	231	Right-handed alpha
Helix 74	AI2	G	232	236	Right-handed 310
Helix 75	AI3	G	250	261	Right-handed alpha
Helix 76	AI4	G	271	286	Right-handed alpha
Helix 77	AI5	G	313	325	Right-handed alpha
Helix 78	AI6	G	345	351	Right-handed alpha
Helix 79	AI7	G	378	389	Right-handed alpha
Helix 80	AI8	G	399	415	Right-handed alpha
Helix 81	AI9	G	421	444	Right-handed alpha
Helix 82	AJ1	G	464	476	Right-handed alpha
Helix 83	AJ2	G	504	523	Right-handed alpha
Helix 84	AJ3	G	541	553	Right-handed alpha
Helix 85	AJ4	C	19	28	Right-handed alpha
Helix 86	AJ5	C	57	86	Right-handed alpha
Helix 87	AJ6	C	105	107	Right-handed 310
Helix 88	AJ7	C	108	114	Right-handed alpha
Helix 89	AJ8	C	115	122	Right-handed 310
Helix 90	AJ9	C	173	186	Right-handed alpha
Helix 91	AK1	C	200	215	Right-handed alpha
Helix 92	AK2	C	224	231	Right-handed alpha
Helix 93	AK3	C	232	236	Right-handed 310
Helix 94	AK4	C	250	261	Right-handed alpha
Helix 95	AK5	C	271	286	Right-handed alpha
Helix 96	AK6	C	313	324	Right-handed alpha
Helix 97	AK7	C	345	351	Right-handed alpha
Helix 98	AK8	C	364	369	Right-handed alpha
Helix 99	AK9	C	378	389	Right-handed alpha
Helix 100	AL1	C	399	415	Right-handed alpha
Helix 101	AL2	C	421	444	Right-handed alpha
Helix 102	AL3	C	464	476	Right-handed alpha
Helix 103	AL4	C	504	523	Right-handed alpha
Helix 104	AL5	C	541	553	Right-handed alpha
Helix 105	AL6	C	555	559	Right-handed 310

There are 15 sheets in PDB entry 8QOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	142	149	anti-parallel
Strand 4	B	505	506	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	349	353	anti-parallel
Strand 4	B	317	320	parallel
Strand 5	B	286	291	parallel
Strand 6	B	231	235	parallel
Strand 7	B	252	256	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	436	first strand
Strand 2	B	445	449	anti-parallel
Strand 3	B	525	527	anti-parallel
Strand 4	B	508	509	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	124	first strand
Strand 2	F	132	137	anti-parallel
Strand 3	F	142	149	anti-parallel
Strand 4	F	505	506	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	211	first strand
Strand 2	F	363	367	anti-parallel
Strand 3	F	349	353	anti-parallel
Strand 4	F	317	320	parallel
Strand 5	F	286	291	parallel
Strand 6	F	231	235	parallel
Strand 7	F	252	256	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	434	436	first strand
Strand 2	F	445	449	anti-parallel
Strand 3	F	525	527	anti-parallel
Strand 4	F	508	509	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	202	203	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	127	first strand
Strand 2	G	133	142	anti-parallel
Strand 3	G	147	158	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	218	222	first strand
Strand 2	G	373	377	anti-parallel
Strand 3	G	359	363	anti-parallel
Strand 4	G	327	331	parallel
Strand 5	G	297	302	parallel
Strand 6	G	242	246	parallel
Strand 7	G	263	267	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	455	459	first strand
Strand 2	G	494	498	anti-parallel
Strand 3	G	481	483	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	133	142	anti-parallel
Strand 3	C	147	158	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	373	377	anti-parallel
Strand 3	C	359	363	anti-parallel
Strand 4	C	327	331	parallel
Strand 5	C	297	302	parallel
Strand 6	C	242	246	parallel
Strand 7	C	263	267	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	310	311	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	459	first strand
Strand 2	C	494	498	anti-parallel
Strand 3	C	481	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOF