Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QOG entry

There are 4 chains in PDB entry 8QOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37ALA 213
B
 PRO 54CYS 553
C
 TYR 7ASN 561
D
 HIS 4SER 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8QOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
72 76Right-handed 310
Helix 3
AA3
A
82 98Right-handed alpha
Helix 4
AA4
A
101 123Right-handed alpha
Helix 5
AA5
A
140 145Right-handed alpha
Helix 6
AA6
A
146 148Right-handed 310
Helix 7
AA7
A
152 170Right-handed alpha
Helix 8
AA8
A
171 173Right-handed 310
Helix 9
AA9
A
176 192Right-handed alpha
Helix 10
AB1
B
55 72Right-handed alpha
Helix 11
AB2
B
89 91Right-handed 310
Helix 12
AB3
B
92 100Right-handed alpha
Helix 13
AB4
B
115 120Right-handed alpha
Helix 14
AB5
B
161 176Right-handed alpha
Helix 15
AB6
B
191 203Right-handed alpha
Helix 16
AB7
B
213 216Right-handed 310
Helix 17
AB8
B
217 222Right-handed alpha
Helix 18
AB9
B
223 226Right-handed 310
Helix 19
AC1
B
239 250Right-handed alpha
Helix 20
AC2
B
260 279Right-handed alpha
Helix 21
AC3
B
302 314Right-handed alpha
Helix 22
AC4
B
334 339Right-handed alpha
Helix 23
AC5
B
342 347Right-handed alpha
Helix 24
AC6
B
368 379Right-handed alpha
Helix 25
AC7
B
379 384Right-handed alpha
Helix 26
AC8
B
389 406Right-handed alpha
Helix 27
AC9
B
407 426Right-handed alpha
Helix 28
AD1
B
450 458Right-handed alpha
Helix 29
AD2
B
461 476Right-handed alpha
Helix 30
AD3
B
482 504Right-handed alpha
Helix 31
AD4
B
534 553Right-handed alpha
Helix 32
AD5
C
19 28Right-handed alpha
Helix 33
AD6
C
57 86Right-handed alpha
Helix 34
AD7
C
105 107Right-handed 310
Helix 35
AD8
C
108 114Right-handed alpha
Helix 36
AD9
C
118 122Right-handed 310
Helix 37
AE1
C
173 186Right-handed alpha
Helix 38
AE2
C
200 215Right-handed alpha
Helix 39
AE3
C
224 231Right-handed alpha
Helix 40
AE4
C
232 236Right-handed 310
Helix 41
AE5
C
250 261Right-handed alpha
Helix 42
AE6
C
271 286Right-handed alpha
Helix 43
AE7
C
313 325Right-handed alpha
Helix 44
AE8
C
345 351Right-handed alpha
Helix 45
AE9
C
378 389Right-handed alpha
Helix 46
AF1
C
390 395Right-handed alpha
Helix 47
AF2
C
399 415Right-handed alpha
Helix 48
AF3
C
421 444Right-handed alpha
Helix 49
AF4
C
464 476Right-handed alpha
Helix 50
AF5
C
504 523Right-handed alpha
Helix 51
AF6
C
541 553Right-handed alpha
Helix 52
AF7
D
29 42Right-handed alpha
Helix 53
AF8
D
50 68Right-handed alpha
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There are 7 sheets in PDB entry 8QOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
202 204anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
132 137anti-parallel
Strand 3
B
142 149anti-parallel
Strand 4
B
505 506parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
349 353anti-parallel
Strand 4
B
317 320parallel
Strand 5
B
286 291parallel
Strand 6
B
231 235parallel
Strand 7
B
252 256parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
445 449anti-parallel
Strand 3
B
525 527anti-parallel
Strand 4
B
508 509anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
133 142anti-parallel
Strand 3
C
147 158anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 222first strand
Strand 2
C
373 377anti-parallel
Strand 3
C
359 363anti-parallel
Strand 4
C
327 332parallel
Strand 5
C
297 302parallel
Strand 6
C
242 246parallel
Strand 7
C
263 267parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
455 459first strand
Strand 2
C
494 498anti-parallel
Strand 3
C
481 483anti-parallel
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