Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QOH entry

There are 2 chains in PDB entry 8QOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 367CYS 640
A
 HIS 368CYS 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8QOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
368 379Right-handed alpha
Helix 2
AA2
B
445 455Right-handed alpha
Helix 3
AA3
B
488 492Right-handed alpha
Helix 4
AA4
B
497 519Right-handed alpha
Helix 5
AA5
B
554 561Right-handed alpha
Helix 6
AA6
B
568 574Right-handed alpha
Helix 7
AA7
B
582 595Right-handed alpha
Helix 8
AA8
B
601 610Right-handed alpha
Helix 9
AA9
B
617 626Right-handed alpha
Helix 10
AB1
B
631 640Right-handed alpha
Helix 11
AB2
A
369 379Right-handed alpha
Helix 12
AB3
A
445 455Right-handed alpha
Helix 13
AB4
A
488 492Right-handed alpha
Helix 14
AB5
A
497 519Right-handed alpha
Helix 15
AB6
A
554 561Right-handed alpha
Helix 16
AB7
A
568 574Right-handed alpha
Helix 17
AB8
A
582 595Right-handed alpha
Helix 18
AB9
A
601 610Right-handed alpha
Helix 19
AC1
A
617 626Right-handed alpha
Helix 20
AC2
A
631 639Right-handed alpha
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There are 6 sheets in PDB entry 8QOH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 387first strand
Strand 2
B
462 468parallel
Strand 3
B
474 479anti-parallel
Strand 4
B
433 438anti-parallel
Strand 5
B
420 427anti-parallel
Strand 6
B
405 415anti-parallel
Strand 7
B
398 402anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 487first strand
Strand 2
B
530 534anti-parallel
Strand 3
B
542 545anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 521first strand
Strand 2
B
552 553anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
462 468parallel
Strand 3
A
474 479anti-parallel
Strand 4
A
433 438anti-parallel
Strand 5
A
420 427anti-parallel
Strand 6
A
405 415anti-parallel
Strand 7
A
398 402anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 487first strand
Strand 2
A
530 534anti-parallel
Strand 3
A
541 545anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 521first strand
Strand 2
A
552 553anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il