Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QOT entry

There are 5 chains in PDB entry 8QOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 66ILE 352
B
 ALA 2ALA 126
H
 GLU 1SER 215
L
 MET 4GLY 212
K
 GLN 1SER 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8QOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 95Right-handed alpha
Helix 2
AA2
A
101 131Right-handed alpha
Helix 3
AA3
A
136 170Right-handed alpha
Helix 4
AA4
A
172 177Right-handed 310
Helix 5
AA5
A
180 205Right-handed alpha
Helix 6
AA6
A
224 258Right-handed alpha
Helix 7
AA7
A
260 266Right-handed alpha
Helix 8
AA8
A
271 306Right-handed alpha
Helix 9
AA9
A
311 339Right-handed alpha
Helix 10
AB1
A
341 350Right-handed alpha
Helix 11
AB2
H
28 32Right-handed 310
Helix 12
AB3
H
83 87Right-handed 310
Helix 13
AB4
H
98 100Right-handed alpha
Helix 14
AB5
H
156 158Right-handed 310
Helix 15
AB6
H
187 189Right-handed 310
Helix 16
AB7
L
79 83Right-handed 310
Helix 17
AB8
L
121 128Right-handed alpha
Helix 18
AB9
L
183 189Right-handed alpha
Helix 19
AC1
K
83 87Right-handed 310
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There are 18 sheets in PDB entry 8QOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
215 219anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
119 123parallel
Strand 3
B
93 105anti-parallel
Strand 4
B
35 41anti-parallel
Strand 5
B
48 54anti-parallel
Strand 6
B
59 61anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
119 123parallel
Strand 3
B
93 105anti-parallel
Strand 4
B
108 114anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 91anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 91anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
94 95anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
164 165anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 200anti-parallel
Strand 3
H
205 211anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
95 97anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 23first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 7first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
77 82anti-parallel
Strand 4
K
67 72anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
57 59first strand
Strand 2
K
46 51anti-parallel
Strand 3
K
34 39anti-parallel
Strand 4
K
89 95anti-parallel
Strand 5
K
100 103anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
57 59first strand
Strand 2
K
46 51anti-parallel
Strand 3
K
34 39anti-parallel
Strand 4
K
89 95anti-parallel
Strand 5
K
107 108anti-parallel
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