Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QOW entry

There is 1 chain in PDB entry 8QOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ASP 611
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8QOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 84Right-handed 310
Helix 2
AA2
A
120 124Right-handed 310
Helix 3
AA3
A
140 144Right-handed 310
Helix 4
AA4
A
201 203Right-handed 310
Helix 5
AA5
A
224 226Right-handed 310
Helix 6
AA6
A
227 235Right-handed alpha
Helix 7
AA7
A
237 250Right-handed alpha
Helix 8
AA8
A
281 284Right-handed 310
Helix 9
AA9
A
291 300Right-handed alpha
Helix 10
AB1
A
311 314Right-handed 310
Helix 11
AB2
A
315 335Right-handed alpha
Helix 12
AB3
A
335 358Right-handed alpha
Helix 13
AB4
A
361 365Right-handed 310
Helix 14
AB5
A
374 379Right-handed alpha
Helix 15
AB6
A
381 398Right-handed alpha
Helix 16
AB7
A
400 416Right-handed alpha
Helix 17
AB8
A
421 433Right-handed alpha
Helix 18
AB9
A
436 441Right-handed alpha
Helix 19
AC1
A
444 451Right-handed alpha
Helix 20
AC2
A
466 479Right-handed alpha
Helix 21
AC3
A
480 487Right-handed 310
Helix 22
AC4
A
488 493Right-handed 310
Helix 23
AC5
A
496 509Right-handed alpha
Helix 24
AC6
A
514 526Right-handed alpha
Helix 25
AC7
A
527 530Right-handed 310
Helix 26
AC8
A
532 546Right-handed alpha
Helix 27
AC9
A
550 562Right-handed alpha
Helix 28
AD1
A
564 578Right-handed alpha
Helix 29
AD2
A
578 593Right-handed alpha
Helix 30
AD3
A
594 596Right-handed 310
Helix 31
AD4
A
597 609Right-handed alpha
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There are 5 sheets in PDB entry 8QOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
100 109anti-parallel
Strand 4
A
34 45anti-parallel
Strand 5
A
17 29anti-parallel
Strand 6
A
154 164parallel
Strand 7
A
187 199anti-parallel
Strand 8
A
174 180anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 57first strand
Strand 2
A
85 95anti-parallel
Strand 3
A
74 76anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
205 208anti-parallel
Strand 4
A
168 171anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
258 261parallel
Strand 4
A
276 279parallel
Strand 5
A
270 271anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
418 420parallel
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