Analysis of interatomic Contacts of Structural Units in PDB entry:
8QOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QOY entry

There is 1 chain in PDB entry 8QOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 100HIS 1145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8QOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
111 125Right-handed alpha
Helix 2
AA2
A
127 142Right-handed alpha
Helix 3
AA3
A
145 159Right-handed alpha
Helix 4
AA4
A
161 174Right-handed alpha
Helix 5
AA5
A
179 194Right-handed alpha
Helix 6
AA6
A
195 209Right-handed alpha
Helix 7
AA7
A
214 220Right-handed alpha
Helix 8
AA8
A
221 227Right-handed alpha
Helix 9
AA9
A
230 246Right-handed alpha
Helix 10
AB1
A
249 263Right-handed alpha
Helix 11
AB2
A
265 279Right-handed alpha
Helix 12
AB3
A
284 298Right-handed alpha
Helix 13
AB4
A
300 315Right-handed alpha
Helix 14
AB5
A
319 333Right-handed alpha
Helix 15
AB6
A
335 345Right-handed alpha
Helix 16
AB7
A
356 361Right-handed alpha
Helix 17
AB8
A
363 379Right-handed alpha
Helix 18
AB9
A
390 394Right-handed 310
Helix 19
AC1
A
397 410Right-handed alpha
Helix 20
AC2
A
427 431Right-handed 310
Helix 21
AC3
A
443 451Right-handed alpha
Helix 22
AC4
A
486 490Right-handed 310
Helix 23
AC5
A
497 507Right-handed alpha
Helix 24
AC6
A
514 525Right-handed alpha
Helix 25
AC7
A
540 542Right-handed 310
Helix 26
AC8
A
543 548Right-handed alpha
Helix 27
AC9
A
550 562Right-handed alpha
Helix 28
AD1
A
589 597Right-handed alpha
Helix 29
AD2
A
609 615Right-handed alpha
Helix 30
AD3
A
631 639Right-handed alpha
Helix 31
AD4
A
649 654Right-handed alpha
Helix 32
AD5
A
655 657Right-handed 310
Helix 33
AD6
A
666 675Right-handed alpha
Helix 34
AD7
A
679 683Right-handed 310
Helix 35
AD8
A
690 705Right-handed alpha
Helix 36
AD9
A
710 718Right-handed alpha
Helix 37
AE1
A
724 734Right-handed alpha
Helix 38
AE2
A
760 773Right-handed alpha
Helix 39
AE3
A
785 791Right-handed alpha
Helix 40
AE4
A
792 800Right-handed alpha
Helix 41
AE5
A
818 832Right-handed alpha
Helix 42
AE6
A
836 856Right-handed alpha
Helix 43
AE7
A
870 878Right-handed alpha
Helix 44
AE8
A
892 900Right-handed alpha
Helix 45
AE9
A
903 909Right-handed alpha
Helix 46
AF1
A
910 914Right-handed 310
Helix 47
AF2
A
921 933Right-handed alpha
Helix 48
AF3
A
939 941Right-handed 310
Helix 49
AF4
A
951 961Right-handed alpha
Helix 50
AF5
A
988 1003Right-handed alpha
Helix 51
AF6
A
1017 1027Right-handed alpha
Helix 52
AF7
A
1042 1049Right-handed alpha
Helix 53
AF8
A
1063 1071Right-handed alpha
Helix 54
AF9
A
1080 1088Right-handed alpha
Helix 55
AG1
A
1098 1113Right-handed alpha
Helix 56
AG2
A
1120 1136Right-handed alpha
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There are 4 sheets in PDB entry 8QOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
415 420parallel
Strand 3
A
382 389parallel
Strand 4
A
453 458parallel
Strand 5
A
473 476parallel
Strand 6
A
509 512parallel
Strand 7
A
534 537parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
603 606parallel
Strand 3
A
569 572parallel
Strand 4
A
641 644parallel
Strand 5
A
660 663parallel
Strand 6
A
686 688parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 810first strand
Strand 2
A
779 784parallel
Strand 3
A
749 753parallel
Strand 4
A
860 865parallel
Strand 5
A
882 889parallel
Strand 6
A
916 919parallel
Strand 7
A
943 945parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1035first strand
Strand 2
A
1006 1011parallel
Strand 3
A
975 980parallel
Strand 4
A
1051 1054parallel
Strand 5
A
1075 1078parallel
Strand 6
A
1093 1095parallel
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