Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QP5 entry

There are 6 chains in PDB entry 8QP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 176	THR 809
B	VAL 29	ARG 392
C	LYS 32	ASP 210
D	PRO 28	SER 243
E	ARG 25	ASN 113
P	GLU 1002	PHE 1300

There are 35 helices in PDB entry 8QP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	196	Right-handed alpha
Helix 2	AA2	A	215	232	Right-handed alpha
Helix 3	AA3	A	280	289	Right-handed alpha
Helix 4	AA4	A	297	315	Right-handed alpha
Helix 5	AA5	A	330	332	Right-handed 310
Helix 6	AA6	A	361	367	Right-handed alpha
Helix 7	AA7	A	378	393	Right-handed alpha
Helix 8	AA8	A	497	501	Right-handed 310
Helix 9	AA9	A	542	553	Right-handed alpha
Helix 10	AB1	A	647	651	Right-handed 310
Helix 11	AB2	A	729	731	Right-handed 310
Helix 12	AB3	B	136	139	Right-handed 310
Helix 13	AB4	C	39	44	Right-handed 310
Helix 14	AB5	C	76	80	Right-handed 310
Helix 15	AB6	C	112	114	Right-handed 310
Helix 16	AB7	C	115	125	Right-handed alpha
Helix 17	AB8	C	191	209	Right-handed alpha
Helix 18	AB9	D	31	46	Right-handed alpha
Helix 19	AC1	D	47	62	Right-handed alpha
Helix 20	AC2	D	67	82	Right-handed alpha
Helix 21	AC3	D	84	99	Right-handed alpha
Helix 22	AC4	D	104	121	Right-handed alpha
Helix 23	AC5	D	124	129	Right-handed alpha
Helix 24	AC6	D	137	154	Right-handed alpha
Helix 25	AC7	D	159	189	Right-handed alpha
Helix 26	AC8	D	192	205	Right-handed alpha
Helix 27	AC9	D	208	225	Right-handed alpha
Helix 28	AD1	D	228	243	Right-handed alpha
Helix 29	AD2	E	39	45	Right-handed alpha
Helix 30	AD3	E	51	60	Right-handed alpha
Helix 31	AD4	P	1003	1022	Right-handed alpha
Helix 32	AD5	P	1024	1029	Right-handed alpha
Helix 33	AD6	P	1136	1139	Right-handed 310
Helix 34	AD7	P	1185	1189	Right-handed 310
Helix 35	AD8	P	1282	1287	Right-handed alpha

There are 19 sheets in PDB entry 8QP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	254	261	parallel
Strand 3	A	239	245	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	274	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	355	first strand
Strand 2	A	412	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	783	first strand
Strand 2	A	767	778	anti-parallel
Strand 3	A	786	792	anti-parallel

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There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	783	first strand
Strand 2	A	767	778	anti-parallel
Strand 3	A	733	745	anti-parallel
Strand 4	A	710	720	anti-parallel
Strand 5	A	628	640	anti-parallel
Strand 6	A	608	620	anti-parallel
Strand 7	A	591	600	anti-parallel
Strand 8	A	564	580	anti-parallel
Strand 9	A	523	537	anti-parallel
Strand 10	A	505	518	anti-parallel
Strand 11	A	484	493	anti-parallel
Strand 12	A	467	475	anti-parallel
Strand 13	A	455	462	anti-parallel
Strand 14	A	440	446	anti-parallel
Strand 15	A	425	430	anti-parallel
Strand 16	P	1294	1299	anti-parallel
Strand 17	P	1275	1276	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	49	first strand
Strand 2	B	388	391	anti-parallel
Strand 3	B	377	380	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	174	anti-parallel
Strand 4	B	183	186	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	257	262	anti-parallel
Strand 3	B	265	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	299	first strand
Strand 2	B	305	309	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	359	361	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	141	143	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	73	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	73	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1040	1051	first strand
Strand 2	P	1057	1068	anti-parallel
Strand 3	P	1079	1092	anti-parallel
Strand 4	P	1096	1112	anti-parallel
Strand 5	P	1117	1134	anti-parallel
Strand 6	P	1140	1157	anti-parallel
Strand 7	P	1166	1178	anti-parallel
Strand 8	P	1202	1213	anti-parallel
Strand 9	P	1222	1231	anti-parallel
Strand 10	P	1257	1259	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1182	1183	first strand
Strand 2	P	1193	1196	anti-parallel
Strand 3	P	1239	1242	anti-parallel
Strand 4	P	1247	1250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP5