Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QP6 entry

There are 10 chains in PDB entry 8QP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	ALA 44
B	VAL 2	SER 228
G	GLU 5	LEU 19
C	LEU 4	GLU 216
D	GLU 5	ASP 22
E	VAL 2	LYS 227
H	VAL 2	LYS 227
I	LEU 4	GLU 216
F	GLU 3	THR 215
J	GLU 5	LYS 25

There are 40 helices in PDB entry 8QP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	20	Right-handed alpha
Helix 2	AA2	A	36	44	Right-handed alpha
Helix 3	AA3	B	29	33	Right-handed 310
Helix 4	AA4	B	63	66	Right-handed 310
Helix 5	AA5	B	88	92	Right-handed 310
Helix 6	AA6	B	169	171	Right-handed 310
Helix 7	AA7	B	199	205	Right-handed alpha
Helix 8	AA8	B	214	217	Right-handed 310
Helix 9	AA9	G	9	19	Right-handed alpha
Helix 10	AB1	C	82	86	Right-handed 310
Helix 11	AB2	C	127	133	Right-handed alpha
Helix 12	AB3	C	187	194	Right-handed alpha
Helix 13	AB4	D	9	20	Right-handed alpha
Helix 14	AB5	E	29	33	Right-handed 310
Helix 15	AB6	E	88	92	Right-handed 310
Helix 16	AB7	E	169	171	Right-handed 310
Helix 17	AB8	E	200	203	Right-handed 310
Helix 18	AB9	E	214	217	Right-handed 310
Helix 19	AC1	H	29	33	Right-handed 310
Helix 20	AC2	H	63	66	Right-handed 310
Helix 21	AC3	H	88	92	Right-handed 310
Helix 22	AC4	H	169	171	Right-handed 310
Helix 23	AC5	H	214	216	Right-handed 310
Helix 24	AC6	I	82	86	Right-handed 310
Helix 25	AC7	I	127	133	Right-handed alpha
Helix 26	AC8	I	187	194	Right-handed alpha
Helix 27	AC9	F	82	86	Right-handed 310
Helix 28	AD1	F	127	133	Right-handed alpha
Helix 29	AD2	F	187	194	Right-handed alpha
Helix 30	AD3	J	9	20	Right-handed alpha
Helix 31	AD4	J	36	44	Right-handed alpha
Helix 32	AD5	K	29	33	Right-handed 310
Helix 33	AD6	K	63	66	Right-handed 310
Helix 34	AD7	K	88	92	Right-handed 310
Helix 35	AD8	K	169	171	Right-handed 310
Helix 36	AD9	K	200	203	Right-handed 310
Helix 37	AE1	K	214	216	Right-handed 310
Helix 38	AE2	L	82	86	Right-handed 310
Helix 39	AE3	L	127	133	Right-handed alpha
Helix 40	AE4	L	187	194	Right-handed alpha

There are 47 sheets in PDB entry 8QP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	120	124	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	34	40	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	120	124	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	113	116	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	148	158	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	176	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	148	158	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	182	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	207	213	anti-parallel
Strand 3	B	218	224	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	107	111	parallel
Strand 3	C	87	95	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	51	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	107	111	parallel
Strand 3	C	87	95	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	65	70	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	136	145	anti-parallel
Strand 3	C	178	186	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	136	145	anti-parallel
Strand 3	C	178	186	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	151	156	anti-parallel
Strand 3	C	197	203	anti-parallel
Strand 4	C	206	212	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	26	anti-parallel
Strand 3	E	79	84	anti-parallel
Strand 4	E	69	74	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	120	124	parallel
Strand 3	E	93	100	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	59	61	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	120	124	parallel
Strand 3	E	93	100	anti-parallel
Strand 4	E	113	116	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	137	first strand
Strand 2	E	148	158	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	176	178	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	137	first strand
Strand 2	E	148	158	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	182	183	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	167	first strand
Strand 2	E	208	213	anti-parallel
Strand 3	E	218	223	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	120	124	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	120	124	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	113	116	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	176	178	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	182	183	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	167	first strand
Strand 2	H	207	213	anti-parallel
Strand 3	H	218	224	anti-parallel
Strand 4	K	218	223	anti-parallel
Strand 5	K	208	213	anti-parallel
Strand 6	K	164	167	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	14	first strand
Strand 2	I	107	111	parallel
Strand 3	I	87	95	anti-parallel
Strand 4	I	36	41	anti-parallel
Strand 5	I	48	51	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	14	first strand
Strand 2	I	107	111	parallel
Strand 3	I	87	95	anti-parallel
Strand 4	I	100	103	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	25	first strand
Strand 2	I	73	78	anti-parallel
Strand 3	I	65	70	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	136	145	anti-parallel
Strand 3	I	178	186	anti-parallel
Strand 4	I	165	167	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	136	145	anti-parallel
Strand 3	I	178	186	anti-parallel
Strand 4	I	171	172	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	159	161	first strand
Strand 2	I	151	156	anti-parallel
Strand 3	I	197	203	anti-parallel
Strand 4	I	206	212	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	107	111	parallel
Strand 3	F	87	95	anti-parallel
Strand 4	F	37	41	anti-parallel
Strand 5	F	48	51	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	107	111	parallel
Strand 3	F	87	95	anti-parallel
Strand 4	F	100	103	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	25	first strand
Strand 2	F	73	78	anti-parallel
Strand 3	F	65	70	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	178	186	anti-parallel
Strand 4	F	165	167	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	145	anti-parallel
Strand 3	F	178	186	anti-parallel
Strand 4	F	171	172	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	161	first strand
Strand 2	F	151	156	anti-parallel
Strand 3	F	197	203	anti-parallel
Strand 4	F	206	212	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	26	anti-parallel
Strand 3	K	79	84	anti-parallel
Strand 4	K	69	74	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	120	124	parallel
Strand 3	K	93	100	anti-parallel
Strand 4	K	34	40	anti-parallel
Strand 5	K	46	52	anti-parallel
Strand 6	K	59	61	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	13	first strand
Strand 2	K	120	124	parallel
Strand 3	K	93	100	anti-parallel
Strand 4	K	113	116	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	148	158	anti-parallel
Strand 3	K	189	198	anti-parallel
Strand 4	K	176	178	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	137	first strand
Strand 2	K	148	158	anti-parallel
Strand 3	K	189	198	anti-parallel
Strand 4	K	182	183	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	107	111	parallel
Strand 3	L	87	95	anti-parallel
Strand 4	L	37	41	anti-parallel
Strand 5	L	48	51	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	107	111	parallel
Strand 3	L	87	95	anti-parallel
Strand 4	L	100	103	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	25	first strand
Strand 2	L	73	78	anti-parallel
Strand 3	L	65	70	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	136	145	anti-parallel
Strand 3	L	178	186	anti-parallel
Strand 4	L	165	167	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	136	145	anti-parallel
Strand 3	L	178	186	anti-parallel
Strand 4	L	171	172	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	161	first strand
Strand 2	L	151	156	anti-parallel
Strand 3	L	197	203	anti-parallel
Strand 4	L	206	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP6