Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QP7 entry

There is 1 chain in PDB entry 8QP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8GLU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8QP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
A
124 130Right-handed 310
Helix 6
AA6
A
146 152Right-handed 310
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
190 194Right-handed 310
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There are 3 sheets in PDB entry 8QP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
69 71parallel
Strand 3
A
91 93parallel
Strand 4
A
113 115parallel
Strand 5
A
135 137parallel
Strand 6
A
157 159parallel
Strand 7
A
179 181parallel
Strand 8
A
201 210parallel
Strand 9
A
274 287parallel
Strand 10
A
214 215parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
69 71parallel
Strand 3
A
91 93parallel
Strand 4
A
113 115parallel
Strand 5
A
135 137parallel
Strand 6
A
157 159parallel
Strand 7
A
179 181parallel
Strand 8
A
201 210parallel
Strand 9
A
274 287parallel
Strand 10
A
260 271anti-parallel
Strand 11
A
238 239anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223first strand
Strand 2
A
249 253anti-parallel
Strand 3
A
244 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il