Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QP8 entry

There are 15 chains in PDB entry 8QP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
7	ASP 461	ARG 473
G	ASP 242	HIS 356
6	U 31	C 77
5	A 3	U 78
4	A 1	A 80
S	LYS 701	MET 759
C	MET 105	PRO 956
U	ARG 100	ARG 556
A	LYS 58	ALA 2335
R	GLU 369	LYS 474
N	VAL 18	PRO 282
L	LYS 341	GLU 390
J	VAL 434	LYS 475
D	SER 2	TYR 142
X	LYS 134	LEU 151

There are151 helices in PDB entry 8QP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	7	461	472	Right-handed alpha
Helix 2	AA2	G	243	255	Right-handed alpha
Helix 3	AA3	G	277	281	Right-handed 310
Helix 4	AA4	G	287	292	Right-handed alpha
Helix 5	AA5	G	308	316	Right-handed alpha
Helix 6	AA6	G	318	328	Right-handed alpha
Helix 7	AA7	G	329	354	Right-handed alpha
Helix 8	AA8	S	721	735	Right-handed alpha
Helix 9	AA9	S	739	758	Right-handed alpha
Helix 10	AB1	C	115	125	Right-handed alpha
Helix 11	AB2	C	141	154	Right-handed alpha
Helix 12	AB3	C	171	178	Right-handed alpha
Helix 13	AB4	C	211	221	Right-handed alpha
Helix 14	AB5	C	236	249	Right-handed alpha
Helix 15	AB6	C	261	266	Right-handed alpha
Helix 16	AB7	C	270	293	Right-handed alpha
Helix 17	AB8	C	301	305	Right-handed 310
Helix 18	AB9	C	319	331	Right-handed alpha
Helix 19	AC1	C	335	344	Right-handed alpha
Helix 20	AC2	C	367	373	Right-handed alpha
Helix 21	AC3	C	373	387	Right-handed alpha
Helix 22	AC4	C	387	399	Right-handed alpha
Helix 23	AC5	C	404	409	Right-handed alpha
Helix 24	AC6	C	411	425	Right-handed alpha
Helix 25	AC7	C	427	437	Right-handed alpha
Helix 26	AC8	C	440	453	Right-handed alpha
Helix 27	AC9	C	459	467	Right-handed alpha
Helix 28	AD1	C	596	598	Right-handed 310
Helix 29	AD2	C	599	614	Right-handed alpha
Helix 30	AD3	C	633	647	Right-handed alpha
Helix 31	AD4	C	695	702	Right-handed alpha
Helix 32	AD5	C	710	721	Right-handed alpha
Helix 33	AD6	C	725	731	Right-handed alpha
Helix 34	AD7	C	755	762	Right-handed alpha
Helix 35	AD8	C	762	777	Right-handed alpha
Helix 36	AD9	C	799	803	Right-handed 310
Helix 37	AE1	C	807	823	Right-handed alpha
Helix 38	AE2	C	841	853	Right-handed alpha
Helix 39	AE3	C	882	891	Right-handed alpha
Helix 40	AE4	C	925	927	Right-handed 310
Helix 41	AE5	C	928	942	Right-handed alpha
Helix 42	AE6	U	105	109	Right-handed 310
Helix 43	AE7	U	150	160	Right-handed alpha
Helix 44	AE8	U	183	185	Right-handed 310
Helix 45	AE9	U	186	194	Right-handed alpha
Helix 46	AF1	U	198	207	Right-handed alpha
Helix 47	AF2	U	234	245	Right-handed alpha
Helix 48	AF3	U	247	256	Right-handed alpha
Helix 49	AF4	U	257	262	Right-handed alpha
Helix 50	AF5	U	271	286	Right-handed alpha
Helix 51	AF6	U	297	308	Right-handed alpha
Helix 52	AF7	U	319	335	Right-handed alpha
Helix 53	AF8	U	344	351	Right-handed alpha
Helix 54	AF9	U	367	374	Right-handed alpha
Helix 55	AG1	U	375	377	Right-handed 310
Helix 56	AG2	U	416	420	Right-handed alpha
Helix 57	AG3	U	482	485	Right-handed 310
Helix 58	AG4	U	486	491	Right-handed alpha
Helix 59	AG5	U	539	546	Right-handed 310
Helix 60	AG6	A	62	73	Right-handed alpha
Helix 61	AG7	A	85	92	Right-handed alpha
Helix 62	AG8	A	94	105	Right-handed alpha
Helix 63	AG9	A	136	158	Right-handed alpha
Helix 64	AH1	A	177	182	Right-handed alpha
Helix 65	AH2	A	231	242	Right-handed alpha
Helix 66	AH3	A	243	246	Right-handed 310
Helix 67	AH4	A	252	256	Right-handed 310
Helix 68	AH5	A	259	269	Right-handed alpha
Helix 69	AH6	A	309	316	Right-handed alpha
Helix 70	AH7	A	397	406	Right-handed alpha
Helix 71	AH8	A	408	413	Right-handed alpha
Helix 72	AH9	A	427	433	Right-handed alpha
Helix 73	AI1	A	440	460	Right-handed alpha
Helix 74	AI2	A	471	479	Right-handed alpha
Helix 75	AI3	A	489	511	Right-handed alpha
Helix 76	AI4	A	531	538	Right-handed alpha
Helix 77	AI5	A	540	567	Right-handed alpha
Helix 78	AI6	A	570	584	Right-handed alpha
Helix 79	AI7	A	584	589	Right-handed alpha
Helix 80	AI8	A	597	617	Right-handed alpha
Helix 81	AI9	A	630	656	Right-handed alpha
Helix 82	AJ1	A	680	696	Right-handed alpha
Helix 83	AJ2	A	701	722	Right-handed alpha
Helix 84	AJ3	A	732	764	Right-handed alpha
Helix 85	AJ4	A	768	797	Right-handed alpha
Helix 86	AJ5	A	802	821	Right-handed alpha
Helix 87	AJ6	A	834	849	Right-handed alpha
Helix 88	AJ7	A	857	873	Right-handed alpha
Helix 89	AJ8	A	873	888	Right-handed alpha
Helix 90	AJ9	A	912	934	Right-handed alpha
Helix 91	AK1	A	947	961	Right-handed alpha
Helix 92	AK2	A	989	1001	Right-handed alpha
Helix 93	AK3	A	1002	1014	Right-handed alpha
Helix 94	AK4	A	1036	1063	Right-handed alpha
Helix 95	AK5	A	1076	1081	Right-handed alpha
Helix 96	AK6	A	1102	1117	Right-handed alpha
Helix 97	AK7	A	1122	1126	Right-handed 310
Helix 98	AK8	A	1143	1161	Right-handed alpha
Helix 99	AK9	A	1233	1250	Right-handed alpha
Helix 100	AL1	A	1255	1274	Right-handed alpha
Helix 101	AL2	A	1274	1281	Right-handed alpha
Helix 102	AL3	A	1281	1304	Right-handed alpha
Helix 103	AL4	A	1313	1318	Right-handed alpha
Helix 104	AL5	A	1319	1323	Right-handed 310
Helix 105	AL6	A	1336	1340	Right-handed 310
Helix 106	AL7	A	1367	1371	Right-handed 310
Helix 107	AL8	A	1374	1399	Right-handed alpha
Helix 108	AL9	A	1408	1412	Right-handed 310
Helix 109	AM1	A	1420	1425	Right-handed 310
Helix 110	AM2	A	1426	1431	Right-handed alpha
Helix 111	AM3	A	1435	1443	Right-handed alpha
Helix 112	AM4	A	1444	1446	Right-handed 310
Helix 113	AM5	A	1457	1462	Right-handed alpha
Helix 114	AM6	A	1467	1479	Right-handed alpha
Helix 115	AM7	A	1479	1486	Right-handed alpha
Helix 116	AM8	A	1490	1494	Right-handed 310
Helix 117	AM9	A	1510	1514	Right-handed 310
Helix 118	AN1	A	1519	1538	Right-handed alpha
Helix 119	AN2	A	1538	1543	Right-handed alpha
Helix 120	AN3	A	1566	1577	Right-handed alpha
Helix 121	AN4	A	1580	1600	Right-handed alpha
Helix 122	AN5	A	1601	1605	Right-handed 310
Helix 123	AN6	A	1615	1621	Right-handed 310
Helix 124	AN7	A	1675	1688	Right-handed alpha
Helix 125	AN8	A	1721	1737	Right-handed alpha
Helix 126	AN9	A	1737	1752	Right-handed alpha
Helix 127	AO1	A	2071	2082	Right-handed alpha
Helix 128	AO2	A	2083	2088	Right-handed 310
Helix 129	AO3	A	2107	2116	Right-handed alpha
Helix 130	AO4	A	2167	2172	Right-handed 310
Helix 131	AO5	A	2189	2203	Right-handed alpha
Helix 132	AO6	A	2231	2241	Right-handed alpha
Helix 133	AO7	A	2252	2254	Right-handed 310
Helix 134	AO8	A	2310	2315	Right-handed alpha
Helix 135	AO9	R	395	404	Right-handed alpha
Helix 136	AP1	R	431	443	Right-handed alpha
Helix 137	AP2	R	461	473	Right-handed alpha
Helix 138	AP3	N	19	24	Right-handed 310
Helix 139	AP4	N	74	76	Right-handed 310
Helix 140	AP5	N	95	114	Right-handed alpha
Helix 141	AP6	N	116	135	Right-handed alpha
Helix 142	AP7	N	137	149	Right-handed alpha
Helix 143	AP8	N	153	159	Right-handed alpha
Helix 144	AP9	N	240	260	Right-handed alpha
Helix 145	AQ1	N	269	281	Right-handed alpha
Helix 146	AQ2	L	357	366	Right-handed alpha
Helix 147	AQ3	J	441	466	Right-handed alpha
Helix 148	AQ4	D	10	18	Right-handed alpha
Helix 149	AQ5	D	35	48	Right-handed alpha
Helix 150	AQ6	D	68	73	Right-handed alpha
Helix 151	AQ7	D	108	126	Right-handed alpha

There are 37 sheets in PDB entry 8QP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	129	136	parallel
Strand 4	C	224	230	parallel
Strand 5	C	252	258	parallel
Strand 6	C	307	311	parallel
Strand 7	C	316	318	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	350	first strand
Strand 2	C	355	357	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	526	first strand
Strand 2	C	506	510	anti-parallel
Strand 3	C	564	566	anti-parallel
Strand 4	C	475	483	anti-parallel
Strand 5	C	490	496	anti-parallel
Strand 6	C	549	553	anti-parallel
Strand 7	C	530	533	anti-parallel
Strand 8	C	538	541	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	502	first strand
Strand 2	C	543	545	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	588	594	anti-parallel
Strand 4	C	653	655	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	588	594	anti-parallel
Strand 4	C	659	660	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	663	666	first strand
Strand 2	C	825	839	anti-parallel
Strand 3	C	868	876	anti-parallel
Strand 4	C	856	862	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	663	666	first strand
Strand 2	C	825	839	anti-parallel
Strand 3	C	896	906	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	676	first strand
Strand 2	C	685	691	anti-parallel
Strand 3	C	787	794	anti-parallel
Strand 4	C	744	747	parallel
Strand 5	C	732	735	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	142	144	first strand
Strand 2	U	133	136	anti-parallel
Strand 3	U	164	166	anti-parallel
Strand 4	U	172	174	anti-parallel
Strand 5	U	179	181	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	213	214	first strand
Strand 2	U	220	221	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	227	228	first strand
Strand 2	U	294	295	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	387	389	first strand
Strand 2	U	352	361	anti-parallel
Strand 3	U	437	446	anti-parallel
Strand 4	U	429	431	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	392	395	first strand
Strand 2	U	450	456	parallel
Strand 3	U	548	554	anti-parallel
Strand 4	U	497	507	anti-parallel
Strand 5	U	479	480	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	392	395	first strand
Strand 2	U	450	456	parallel
Strand 3	U	548	554	anti-parallel
Strand 4	U	497	507	anti-parallel
Strand 5	U	514	520	anti-parallel
Strand 6	U	527	531	anti-parallel
Strand 7	U	534	538	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	413	415	first strand
Strand 2	U	471	473	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	458	460	first strand
Strand 2	U	465	467	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	129	first strand
Strand 2	A	115	121	anti-parallel
Strand 3	A	482	488	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	419	420	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	415	417	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	518	first strand
Strand 2	A	524	526	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	910	first strand
Strand 2	A	894	901	anti-parallel
Strand 3	A	1016	1018	parallel
Strand 4	A	1023	1025	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1090	first strand
Strand 2	A	1095	1101	anti-parallel
Strand 3	A	973	979	anti-parallel
Strand 4	A	1174	1178	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1189	first strand
Strand 2	A	1192	1198	anti-parallel
Strand 3	A	1223	1232	anti-parallel
Strand 4	A	1213	1218	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1342	1346	first strand
Strand 2	A	1349	1353	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1502	1503	first strand
Strand 2	A	1753	1754	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1552	1554	first strand
Strand 2	A	1561	1563	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1608	1611	first strand
Strand 2	A	1629	1640	anti-parallel
Strand 3	A	1652	1667	anti-parallel
Strand 4	A	1700	1706	parallel
Strand 5	A	1711	1714	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2090	2092	first strand
Strand 2	A	2223	2225	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2103	2104	first strand
Strand 2	A	2139	2146	parallel
Strand 3	A	2125	2131	anti-parallel
Strand 4	A	2173	2181	anti-parallel
Strand 5	A	2212	2217	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2103	2104	first strand
Strand 2	A	2139	2146	parallel
Strand 3	A	2270	2274	parallel
Strand 4	A	2296	2298	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2229	2230	first strand
Strand 2	A	2256	2257	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	409	414	first strand
Strand 2	R	421	429	anti-parallel
Strand 3	R	381	386	anti-parallel
Strand 4	R	453	456	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	446	447	first strand
Strand 2	R	450	451	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	78	79	first strand
Strand 2	N	83	84	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	56	62	parallel
Strand 3	D	25	31	parallel
Strand 4	D	80	85	anti-parallel
Strand 5	D	88	89	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	129	131	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP8