Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QP9 entry

There are 16 chains in PDB entry 8QP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
7	ASP 461	ARG 473
B	ASP 257	GLU 365
C	MET 105	PRO 956
D	SER 2	TYR 142
J	VAL 434	LYS 475
L	LYS 341	GLU 390
R	GLU 369	LYS 474
S	LYS 701	MET 759
U	ARG 100	ARG 556
X	ALA 126	LEU 151
G	ASP 242	HIS 356
6	U 31	C 77
5	A 3	U 78
4	A 1	A 80
A	LYS 58	ILE 2016
N	VAL 18	PRO 282

There are157 helices in PDB entry 8QP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	7	461	472	Right-handed alpha
Helix 2	AA2	B	266	273	Right-handed alpha
Helix 3	AA3	B	278	294	Right-handed alpha
Helix 4	AA4	B	298	311	Right-handed alpha
Helix 5	AA5	B	314	324	Right-handed alpha
Helix 6	AA6	B	325	336	Right-handed alpha
Helix 7	AA7	B	339	353	Right-handed alpha
Helix 8	AA8	B	353	364	Right-handed alpha
Helix 9	AA9	C	115	125	Right-handed alpha
Helix 10	AB1	C	141	154	Right-handed alpha
Helix 11	AB2	C	171	178	Right-handed alpha
Helix 12	AB3	C	211	220	Right-handed alpha
Helix 13	AB4	C	236	249	Right-handed alpha
Helix 14	AB5	C	259	266	Right-handed alpha
Helix 15	AB6	C	270	293	Right-handed alpha
Helix 16	AB7	C	319	332	Right-handed alpha
Helix 17	AB8	C	335	341	Right-handed alpha
Helix 18	AB9	C	367	373	Right-handed alpha
Helix 19	AC1	C	373	387	Right-handed alpha
Helix 20	AC2	C	387	400	Right-handed alpha
Helix 21	AC3	C	406	410	Right-handed 310
Helix 22	AC4	C	411	425	Right-handed alpha
Helix 23	AC5	C	427	438	Right-handed alpha
Helix 24	AC6	C	444	452	Right-handed alpha
Helix 25	AC7	C	459	468	Right-handed alpha
Helix 26	AC8	C	518	522	Right-handed 310
Helix 27	AC9	C	596	598	Right-handed 310
Helix 28	AD1	C	599	614	Right-handed alpha
Helix 29	AD2	C	634	645	Right-handed alpha
Helix 30	AD3	C	679	682	Right-handed 310
Helix 31	AD4	C	695	702	Right-handed alpha
Helix 32	AD5	C	710	721	Right-handed alpha
Helix 33	AD6	C	727	730	Right-handed 310
Helix 34	AD7	C	755	762	Right-handed alpha
Helix 35	AD8	C	762	777	Right-handed alpha
Helix 36	AD9	C	807	823	Right-handed alpha
Helix 37	AE1	C	842	852	Right-handed alpha
Helix 38	AE2	C	878	880	Right-handed 310
Helix 39	AE3	C	882	891	Right-handed alpha
Helix 40	AE4	C	928	941	Right-handed alpha
Helix 41	AE5	D	10	21	Right-handed alpha
Helix 42	AE6	D	35	48	Right-handed alpha
Helix 43	AE7	D	51	54	Right-handed 310
Helix 44	AE8	D	67	73	Right-handed alpha
Helix 45	AE9	D	108	126	Right-handed alpha
Helix 46	AF1	J	441	466	Right-handed alpha
Helix 47	AF2	L	359	366	Right-handed alpha
Helix 48	AF3	R	372	376	Right-handed 310
Helix 49	AF4	R	431	442	Right-handed alpha
Helix 50	AF5	R	461	473	Right-handed alpha
Helix 51	AF6	S	721	735	Right-handed alpha
Helix 52	AF7	S	739	759	Right-handed alpha
Helix 53	AF8	U	106	111	Right-handed 310
Helix 54	AF9	U	112	116	Right-handed 310
Helix 55	AG1	U	150	160	Right-handed alpha
Helix 56	AG2	U	183	185	Right-handed 310
Helix 57	AG3	U	186	194	Right-handed alpha
Helix 58	AG4	U	204	208	Right-handed 310
Helix 59	AG5	U	234	245	Right-handed alpha
Helix 60	AG6	U	247	255	Right-handed alpha
Helix 61	AG7	U	257	262	Right-handed alpha
Helix 62	AG8	U	271	286	Right-handed alpha
Helix 63	AG9	U	297	307	Right-handed alpha
Helix 64	AH1	U	319	336	Right-handed alpha
Helix 65	AH2	U	344	351	Right-handed alpha
Helix 66	AH3	U	367	377	Right-handed alpha
Helix 67	AH4	U	416	421	Right-handed alpha
Helix 68	AH5	U	422	424	Right-handed 310
Helix 69	AH6	U	486	490	Right-handed 310
Helix 70	AH7	U	539	544	Right-handed alpha
Helix 71	AH8	G	243	255	Right-handed alpha
Helix 72	AH9	G	277	281	Right-handed 310
Helix 73	AI1	G	308	315	Right-handed alpha
Helix 74	AI2	G	318	328	Right-handed alpha
Helix 75	AI3	G	329	353	Right-handed alpha
Helix 76	AI4	A	62	73	Right-handed alpha
Helix 77	AI5	A	85	92	Right-handed alpha
Helix 78	AI6	A	94	105	Right-handed alpha
Helix 79	AI7	A	136	158	Right-handed alpha
Helix 80	AI8	A	177	182	Right-handed alpha
Helix 81	AI9	A	200	204	Right-handed 310
Helix 82	AJ1	A	231	243	Right-handed alpha
Helix 83	AJ2	A	251	256	Right-handed 310
Helix 84	AJ3	A	259	269	Right-handed alpha
Helix 85	AJ4	A	287	291	Right-handed 310
Helix 86	AJ5	A	309	316	Right-handed alpha
Helix 87	AJ6	A	395	405	Right-handed alpha
Helix 88	AJ7	A	408	413	Right-handed alpha
Helix 89	AJ8	A	427	433	Right-handed alpha
Helix 90	AJ9	A	440	460	Right-handed alpha
Helix 91	AK1	A	471	479	Right-handed alpha
Helix 92	AK2	A	489	508	Right-handed alpha
Helix 93	AK3	A	531	538	Right-handed alpha
Helix 94	AK4	A	541	566	Right-handed alpha
Helix 95	AK5	A	570	583	Right-handed alpha
Helix 96	AK6	A	585	590	Right-handed alpha
Helix 97	AK7	A	597	617	Right-handed alpha
Helix 98	AK8	A	630	656	Right-handed alpha
Helix 99	AK9	A	680	697	Right-handed alpha
Helix 100	AL1	A	704	721	Right-handed alpha
Helix 101	AL2	A	732	764	Right-handed alpha
Helix 102	AL3	A	768	798	Right-handed alpha
Helix 103	AL4	A	802	821	Right-handed alpha
Helix 104	AL5	A	834	848	Right-handed alpha
Helix 105	AL6	A	857	873	Right-handed alpha
Helix 106	AL7	A	873	888	Right-handed alpha
Helix 107	AL8	A	912	934	Right-handed alpha
Helix 108	AL9	A	947	962	Right-handed alpha
Helix 109	AM1	A	989	998	Right-handed alpha
Helix 110	AM2	A	1002	1014	Right-handed alpha
Helix 111	AM3	A	1036	1054	Right-handed alpha
Helix 112	AM4	A	1054	1062	Right-handed alpha
Helix 113	AM5	A	1076	1081	Right-handed alpha
Helix 114	AM6	A	1102	1117	Right-handed alpha
Helix 115	AM7	A	1123	1127	Right-handed 310
Helix 116	AM8	A	1143	1161	Right-handed alpha
Helix 117	AM9	A	1233	1250	Right-handed alpha
Helix 118	AN1	A	1255	1274	Right-handed alpha
Helix 119	AN2	A	1276	1281	Right-handed alpha
Helix 120	AN3	A	1281	1304	Right-handed alpha
Helix 121	AN4	A	1312	1318	Right-handed alpha
Helix 122	AN5	A	1336	1340	Right-handed 310
Helix 123	AN6	A	1367	1372	Right-handed alpha
Helix 124	AN7	A	1374	1399	Right-handed alpha
Helix 125	AN8	A	1426	1433	Right-handed alpha
Helix 126	AN9	A	1435	1443	Right-handed alpha
Helix 127	AO1	A	1444	1446	Right-handed 310
Helix 128	AO2	A	1467	1478	Right-handed alpha
Helix 129	AO3	A	1479	1487	Right-handed alpha
Helix 130	AO4	A	1519	1538	Right-handed alpha
Helix 131	AO5	A	1538	1543	Right-handed alpha
Helix 132	AO6	A	1566	1577	Right-handed alpha
Helix 133	AO7	A	1580	1600	Right-handed alpha
Helix 134	AO8	A	1615	1619	Right-handed 310
Helix 135	AO9	A	1675	1689	Right-handed alpha
Helix 136	AP1	A	1722	1737	Right-handed alpha
Helix 137	AP2	A	1737	1751	Right-handed alpha
Helix 138	AP3	A	1767	1773	Right-handed 310
Helix 139	AP4	A	1782	1786	Right-handed 310
Helix 140	AP5	A	1823	1828	Right-handed alpha
Helix 141	AP6	A	1833	1852	Right-handed alpha
Helix 142	AP7	A	1853	1857	Right-handed 310
Helix 143	AP8	A	1865	1867	Right-handed 310
Helix 144	AP9	A	1868	1876	Right-handed alpha
Helix 145	AQ1	A	1892	1899	Right-handed 310
Helix 146	AQ2	A	1901	1909	Right-handed alpha
Helix 147	AQ3	A	1928	1946	Right-handed alpha
Helix 148	AQ4	A	1947	1955	Right-handed alpha
Helix 149	AQ5	A	1972	1996	Right-handed alpha
Helix 150	AQ6	A	2003	2013	Right-handed alpha
Helix 151	AQ7	N	19	24	Right-handed 310
Helix 152	AQ8	N	95	112	Right-handed alpha
Helix 153	AQ9	N	116	132	Right-handed alpha
Helix 154	AR1	N	137	150	Right-handed alpha
Helix 155	AR2	N	239	260	Right-handed alpha
Helix 156	AR3	N	269	276	Right-handed alpha
Helix 157	AR4	N	277	280	Right-handed 310

There are 34 sheets in PDB entry 8QP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	129	133	parallel
Strand 4	C	224	225	parallel
Strand 5	C	252	253	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	256	258	parallel
Strand 3	C	308	309	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	350	first strand
Strand 2	C	355	357	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	483	first strand
Strand 2	C	490	495	anti-parallel
Strand 3	C	549	551	anti-parallel
Strand 4	C	531	532	anti-parallel
Strand 5	C	539	540	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	502	first strand
Strand 2	C	543	544	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	526	first strand
Strand 2	C	506	510	anti-parallel
Strand 3	C	564	566	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	588	594	anti-parallel
Strand 4	C	653	655	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	588	594	anti-parallel
Strand 4	C	659	660	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	677	first strand
Strand 2	C	684	691	anti-parallel
Strand 3	C	787	795	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	732	734	first strand
Strand 2	C	745	746	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	856	859	first strand
Strand 2	C	868	876	anti-parallel
Strand 3	C	828	839	anti-parallel
Strand 4	C	900	906	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	25	29	parallel
Strand 3	D	81	84	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	129	130	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	425	429	first strand
Strand 2	R	381	386	anti-parallel
Strand 3	R	453	456	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	142	144	first strand
Strand 2	U	133	136	anti-parallel
Strand 3	U	164	166	anti-parallel
Strand 4	U	172	174	anti-parallel
Strand 5	U	179	180	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	213	214	first strand
Strand 2	U	220	221	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	352	354	first strand
Strand 2	U	387	389	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	357	358	first strand
Strand 2	U	383	384	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	391	392	first strand
Strand 2	U	450	454	parallel
Strand 3	U	550	554	anti-parallel
Strand 4	U	497	508	anti-parallel
Strand 5	U	479	480	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	391	392	first strand
Strand 2	U	450	454	parallel
Strand 3	U	550	554	anti-parallel
Strand 4	U	497	508	anti-parallel
Strand 5	U	513	519	anti-parallel
Strand 6	U	529	530	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	413	415	first strand
Strand 2	U	471	473	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	428	431	first strand
Strand 2	U	438	441	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	485	488	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	415	416	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	518	first strand
Strand 2	A	524	526	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	910	first strand
Strand 2	A	894	899	anti-parallel
Strand 3	A	1016	1019	parallel
Strand 4	A	1022	1025	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1088	first strand
Strand 2	A	1095	1101	anti-parallel
Strand 3	A	973	979	anti-parallel
Strand 4	A	1174	1178	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1189	first strand
Strand 2	A	1192	1198	anti-parallel
Strand 3	A	1226	1232	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1343	1344	first strand
Strand 2	A	1351	1352	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1501	1503	first strand
Strand 2	A	1753	1755	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1552	1554	first strand
Strand 2	A	1561	1563	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1609	1611	first strand
Strand 2	A	1629	1638	anti-parallel
Strand 3	A	1656	1667	anti-parallel
Strand 4	A	1700	1706	parallel
Strand 5	A	1711	1714	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1788	1791	first strand
Strand 2	A	1799	1802	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1805	1811	first strand
Strand 2	A	1816	1822	anti-parallel
Strand 3	A	1916	1917	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QP9