Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QPF entry

There are 3 chains in PDB entry 8QPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 399
B
 SER 2GLU 399
C
 SER 2GLU 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8QPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 32Right-handed alpha
Helix 2
AA2
A
37 59Right-handed alpha
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
87 110Right-handed alpha
Helix 5
AA5
A
115 129Right-handed alpha
Helix 6
AA6
A
129 140Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
168 184Right-handed alpha
Helix 9
AA9
A
203 226Right-handed alpha
Helix 10
AB1
A
232 256Right-handed alpha
Helix 11
AB2
A
262 280Right-handed alpha
Helix 12
AB3
A
286 311Right-handed alpha
Helix 13
AB4
A
318 323Right-handed alpha
Helix 14
AB5
A
323 338Right-handed alpha
Helix 15
AB6
A
339 343Right-handed 310
Helix 16
AB7
A
348 382Right-handed alpha
Helix 17
AB8
A
387 394Right-handed alpha
Helix 18
AB9
A
395 398Right-handed 310
Helix 19
AC1
B
3 32Right-handed alpha
Helix 20
AC2
B
37 59Right-handed alpha
Helix 21
AC3
B
59 66Right-handed alpha
Helix 22
AC4
B
87 108Right-handed alpha
Helix 23
AC5
B
109 111Right-handed 310
Helix 24
AC6
B
115 129Right-handed alpha
Helix 25
AC7
B
129 140Right-handed alpha
Helix 26
AC8
B
152 158Right-handed alpha
Helix 27
AC9
B
168 184Right-handed alpha
Helix 28
AD1
B
203 226Right-handed alpha
Helix 29
AD2
B
232 256Right-handed alpha
Helix 30
AD3
B
262 280Right-handed alpha
Helix 31
AD4
B
286 311Right-handed alpha
Helix 32
AD5
B
318 323Right-handed alpha
Helix 33
AD6
B
323 338Right-handed alpha
Helix 34
AD7
B
339 343Right-handed 310
Helix 35
AD8
B
348 382Right-handed alpha
Helix 36
AD9
B
387 394Right-handed alpha
Helix 37
AE1
B
395 398Right-handed 310
Helix 38
AE2
C
3 32Right-handed alpha
Helix 39
AE3
C
37 59Right-handed alpha
Helix 40
AE4
C
59 66Right-handed alpha
Helix 41
AE5
C
87 110Right-handed alpha
Helix 42
AE6
C
115 129Right-handed alpha
Helix 43
AE7
C
129 140Right-handed alpha
Helix 44
AE8
C
152 158Right-handed alpha
Helix 45
AE9
C
168 184Right-handed alpha
Helix 46
AF1
C
203 226Right-handed alpha
Helix 47
AF2
C
232 256Right-handed alpha
Helix 48
AF3
C
262 280Right-handed alpha
Helix 49
AF4
C
286 311Right-handed alpha
Helix 50
AF5
C
318 323Right-handed alpha
Helix 51
AF6
C
323 338Right-handed alpha
Helix 52
AF7
C
339 343Right-handed 310
Helix 53
AF8
C
348 382Right-handed alpha
Helix 54
AF9
C
387 394Right-handed alpha
Helix 55
AG1
C
395 398Right-handed 310
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There are 3 sheets in PDB entry 8QPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
195 196anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
195 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 191first strand
Strand 2
C
195 196anti-parallel
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