Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QPL entry

There are 2 chains in PDB entry 8QPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 331
B
 MET 1LYS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8QPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
41 53Right-handed alpha
Helix 3
AA3
A
69 85Right-handed alpha
Helix 4
AA4
A
96 104Right-handed alpha
Helix 5
AA5
A
109 126Right-handed alpha
Helix 6
AA6
A
161 172Right-handed alpha
Helix 7
AA7
A
181 200Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
219 238Right-handed alpha
Helix 10
AB1
A
239 247Right-handed alpha
Helix 11
AB2
A
249 262Right-handed alpha
Helix 12
AB3
A
264 271Right-handed alpha
Helix 13
AB4
A
273 281Right-handed alpha
Helix 14
AB5
A
285 299Right-handed alpha
Helix 15
AB6
A
313 325Right-handed alpha
Helix 16
AB7
B
12 26Right-handed alpha
Helix 17
AB8
B
41 52Right-handed alpha
Helix 18
AB9
B
69 85Right-handed alpha
Helix 19
AC1
B
96 104Right-handed alpha
Helix 20
AC2
B
109 126Right-handed alpha
Helix 21
AC3
B
161 172Right-handed alpha
Helix 22
AC4
B
181 199Right-handed alpha
Helix 23
AC5
B
202 206Right-handed 310
Helix 24
AC6
B
219 238Right-handed alpha
Helix 25
AC7
B
239 247Right-handed alpha
Helix 26
AC8
B
249 260Right-handed alpha
Helix 27
AC9
B
266 271Right-handed alpha
Helix 28
AD1
B
273 280Right-handed alpha
Helix 29
AD2
B
285 299Right-handed alpha
Helix 30
AD3
B
313 325Right-handed alpha
Helix 31
AD4
B
326 330Right-handed 310
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There are 6 sheets in PDB entry 8QPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
30 33parallel
Strand 3
A
2 7parallel
Strand 4
A
303 310parallel
Strand 5
A
207 216parallel
Strand 6
A
174 177parallel
Strand 7
A
155 158parallel
Strand 8
A
90 92parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
30 33parallel
Strand 3
A
2 7parallel
Strand 4
A
303 310parallel
Strand 5
A
207 216parallel
Strand 6
A
282 284parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
138 142anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
30 33parallel
Strand 3
B
2 7parallel
Strand 4
B
303 307parallel
Strand 5
B
207 216parallel
Strand 6
B
174 177parallel
Strand 7
B
155 158parallel
Strand 8
B
90 92parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
30 33parallel
Strand 3
B
2 7parallel
Strand 4
B
303 307parallel
Strand 5
B
207 216parallel
Strand 6
B
282 284parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
138 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il