Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QPM entry

There are 2 chains in PDB entry 8QPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 329
B	MET 1	LEU 329

There are 64 helices in PDB entry 8QPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	26	Right-handed alpha
Helix 2	AA2	A	41	52	Right-handed alpha
Helix 3	AA3	A	69	84	Right-handed alpha
Helix 4	AA4	A	96	104	Right-handed alpha
Helix 5	AA5	A	109	126	Right-handed alpha
Helix 6	AA6	A	161	172	Right-handed alpha
Helix 7	AA7	A	181	199	Right-handed alpha
Helix 8	AA8	A	202	206	Right-handed 310
Helix 9	AA9	A	219	238	Right-handed alpha
Helix 10	AB1	A	239	246	Right-handed alpha
Helix 11	AB2	A	249	262	Right-handed alpha
Helix 12	AB3	A	264	271	Right-handed alpha
Helix 13	AB4	A	273	281	Right-handed alpha
Helix 14	AB5	A	285	299	Right-handed alpha
Helix 15	AB6	A	313	325	Right-handed alpha
Helix 16	AB7	A	326	329	Right-handed 310
Helix 17	AB8	B	12	26	Right-handed alpha
Helix 18	AB9	B	41	52	Right-handed alpha
Helix 19	AC1	B	69	84	Right-handed alpha
Helix 20	AC2	B	96	104	Right-handed alpha
Helix 21	AC3	B	109	126	Right-handed alpha
Helix 22	AC4	B	161	172	Right-handed alpha
Helix 23	AC5	B	181	199	Right-handed alpha
Helix 24	AC6	B	202	206	Right-handed 310
Helix 25	AC7	B	219	238	Right-handed alpha
Helix 26	AC8	B	239	246	Right-handed alpha
Helix 27	AC9	B	249	262	Right-handed alpha
Helix 28	AD1	B	264	271	Right-handed alpha
Helix 29	AD2	B	273	281	Right-handed alpha
Helix 30	AD3	B	285	299	Right-handed alpha
Helix 31	AD4	B	313	325	Right-handed alpha
Helix 32	AD5	B	326	329	Right-handed 310
Helix 33	AD6	C	12	26	Right-handed alpha
Helix 34	AD7	C	41	53	Right-handed alpha
Helix 35	AD8	C	69	85	Right-handed alpha
Helix 36	AD9	C	96	104	Right-handed alpha
Helix 37	AE1	C	109	126	Right-handed alpha
Helix 38	AE2	C	161	172	Right-handed alpha
Helix 39	AE3	C	181	199	Right-handed alpha
Helix 40	AE4	C	202	206	Right-handed 310
Helix 41	AE5	C	219	236	Right-handed alpha
Helix 42	AE6	C	239	244	Right-handed alpha
Helix 43	AE7	C	245	247	Right-handed 310
Helix 44	AE8	C	249	263	Right-handed alpha
Helix 45	AE9	C	264	271	Right-handed alpha
Helix 46	AF1	C	273	281	Right-handed alpha
Helix 47	AF2	C	285	299	Right-handed alpha
Helix 48	AF3	C	313	325	Right-handed alpha
Helix 49	AF4	D	12	26	Right-handed alpha
Helix 50	AF5	D	41	53	Right-handed alpha
Helix 51	AF6	D	69	84	Right-handed alpha
Helix 52	AF7	D	96	104	Right-handed alpha
Helix 53	AF8	D	109	126	Right-handed alpha
Helix 54	AF9	D	161	172	Right-handed alpha
Helix 55	AG1	D	183	199	Right-handed alpha
Helix 56	AG2	D	202	206	Right-handed 310
Helix 57	AG3	D	219	237	Right-handed alpha
Helix 58	AG4	D	239	246	Right-handed alpha
Helix 59	AG5	D	249	262	Right-handed alpha
Helix 60	AG6	D	264	271	Right-handed alpha
Helix 61	AG7	D	273	279	Right-handed alpha
Helix 62	AG8	D	285	299	Right-handed alpha
Helix 63	AG9	D	313	325	Right-handed alpha
Helix 64	AH1	D	326	329	Right-handed 310

There are 12 sheets in PDB entry 8QPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	30	33	parallel
Strand 3	A	2	7	parallel
Strand 4	A	303	310	parallel
Strand 5	A	207	216	parallel
Strand 6	A	174	177	parallel
Strand 7	A	155	158	parallel
Strand 8	A	90	92	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	30	33	parallel
Strand 3	A	2	7	parallel
Strand 4	A	303	310	parallel
Strand 5	A	207	216	parallel
Strand 6	A	282	284	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	138	142	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	30	33	parallel
Strand 3	B	2	7	parallel
Strand 4	B	303	310	parallel
Strand 5	B	207	216	parallel
Strand 6	B	174	177	parallel
Strand 7	B	155	158	parallel
Strand 8	B	90	92	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	30	33	parallel
Strand 3	B	2	7	parallel
Strand 4	B	303	310	parallel
Strand 5	B	207	216	parallel
Strand 6	B	282	284	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	138	142	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	30	33	parallel
Strand 3	C	2	7	parallel
Strand 4	C	303	310	parallel
Strand 5	C	207	216	parallel
Strand 6	C	174	177	parallel
Strand 7	C	155	158	parallel
Strand 8	C	90	92	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	30	33	parallel
Strand 3	C	2	7	parallel
Strand 4	C	303	310	parallel
Strand 5	C	207	216	parallel
Strand 6	C	282	284	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	138	142	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	30	33	parallel
Strand 3	D	2	7	parallel
Strand 4	D	303	310	parallel
Strand 5	D	207	216	parallel
Strand 6	D	174	177	parallel
Strand 7	D	155	158	parallel
Strand 8	D	90	92	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	30	33	parallel
Strand 3	D	2	7	parallel
Strand 4	D	303	310	parallel
Strand 5	D	207	216	parallel
Strand 6	D	282	284	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	138	142	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPM