Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QPR entry

There are 3 chains in PDB entry 8QPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 15ARG 567
D
 VAL 3GLY 111
E
 GLN 1ALA 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8QPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 304Right-handed alpha
Helix 2
AA2
A
365 370Right-handed alpha
Helix 3
AA3
A
386 390Right-handed 310
Helix 4
AA4
A
403 410Right-handed 310
Helix 5
AA5
E
87 91Right-handed 310
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There are 11 sheets in PDB entry 8QPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
189 196anti-parallel
Strand 6
A
201 208anti-parallel
Strand 7
A
224 229anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
285 290anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 242anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
126 131anti-parallel
Strand 6
A
166 172anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
539 543parallel
Strand 3
A
546 550anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
394 402anti-parallel
Strand 3
A
508 516anti-parallel
Strand 4
A
431 435anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
108 109parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 23first strand
Strand 2
D
72 76anti-parallel
Strand 3
D
67 68anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 51first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
87 95anti-parallel
Strand 4
D
98 100anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
116 120parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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