Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QPS entry

There are 2 chains in PDB entry 8QPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4TYR 223
B
 ASN 4TYR 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8QPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 7Right-handed 310
Helix 2
AA2
A
19 34Right-handed alpha
Helix 3
AA3
A
41 43Right-handed 310
Helix 4
AA4
A
44 53Right-handed alpha
Helix 5
AA5
A
71 85Right-handed alpha
Helix 6
AA6
A
95 101Right-handed alpha
Helix 7
AA7
A
103 119Right-handed alpha
Helix 8
AA8
A
129 133Right-handed 310
Helix 9
AA9
A
134 148Right-handed alpha
Helix 10
AB1
A
165 177Right-handed alpha
Helix 11
AB2
A
190 201Right-handed alpha
Helix 12
AB3
A
209 215Right-handed alpha
Helix 13
AB4
B
5 7Right-handed 310
Helix 14
AB5
B
19 34Right-handed alpha
Helix 15
AB6
B
44 53Right-handed alpha
Helix 16
AB7
B
71 86Right-handed alpha
Helix 17
AB8
B
95 101Right-handed alpha
Helix 18
AB9
B
103 119Right-handed alpha
Helix 19
AC1
B
129 133Right-handed 310
Helix 20
AC2
B
134 148Right-handed alpha
Helix 21
AC3
B
165 177Right-handed alpha
Helix 22
AC4
B
190 201Right-handed alpha
Helix 23
AC5
B
209 215Right-handed alpha
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There are 2 sheets in PDB entry 8QPS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
37 40parallel
Strand 3
A
58 63parallel
Strand 4
A
89 93parallel
Strand 5
A
123 127parallel
Strand 6
A
152 154parallel
Strand 7
A
181 185parallel
Strand 8
A
204 207parallel
Strand 9
A
9 12parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
37 40parallel
Strand 3
B
58 63parallel
Strand 4
B
89 93parallel
Strand 5
B
123 127parallel
Strand 6
B
152 154parallel
Strand 7
B
181 185parallel
Strand 8
B
204 207parallel
Strand 9
B
9 13parallel
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