Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QPV entry

There are 6 chains in PDB entry 8QPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	ASN 24	ARG 392
C	ARG 30	SER 212
D	GLU 26	SER 243
E	ARG 25	ASN 113
F	VAL 25	PHE 603

There are 38 helices in PDB entry 8QPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	69	Right-handed alpha
Helix 2	AA2	A	106	117	Right-handed alpha
Helix 3	AA3	A	126	145	Right-handed alpha
Helix 4	AA4	A	189	196	Right-handed alpha
Helix 5	AA5	A	215	232	Right-handed alpha
Helix 6	AA6	A	280	288	Right-handed alpha
Helix 7	AA7	A	297	315	Right-handed alpha
Helix 8	AA8	A	362	367	Right-handed alpha
Helix 9	AA9	A	378	391	Right-handed alpha
Helix 10	AB1	A	448	452	Right-handed 310
Helix 11	AB2	A	542	553	Right-handed alpha
Helix 12	AB3	A	647	651	Right-handed 310
Helix 13	AB4	B	136	139	Right-handed 310
Helix 14	AB5	B	237	242	Right-handed 310
Helix 15	AB6	C	39	43	Right-handed 310
Helix 16	AB7	C	76	80	Right-handed 310
Helix 17	AB8	C	116	127	Right-handed alpha
Helix 18	AB9	C	190	211	Right-handed alpha
Helix 19	AC1	D	31	46	Right-handed alpha
Helix 20	AC2	D	47	62	Right-handed alpha
Helix 21	AC3	D	67	82	Right-handed alpha
Helix 22	AC4	D	84	99	Right-handed alpha
Helix 23	AC5	D	104	121	Right-handed alpha
Helix 24	AC6	D	124	129	Right-handed alpha
Helix 25	AC7	D	137	154	Right-handed alpha
Helix 26	AC8	D	159	189	Right-handed alpha
Helix 27	AC9	D	190	205	Right-handed alpha
Helix 28	AD1	D	209	225	Right-handed alpha
Helix 29	AD2	D	227	241	Right-handed alpha
Helix 30	AD3	E	39	44	Right-handed alpha
Helix 31	AD4	E	51	60	Right-handed alpha
Helix 32	AD5	F	39	47	Right-handed alpha
Helix 33	AD6	F	62	88	Right-handed alpha
Helix 34	AD7	F	92	107	Right-handed alpha
Helix 35	AD8	F	110	122	Right-handed alpha
Helix 36	AD9	F	124	149	Right-handed alpha
Helix 37	AE1	F	155	164	Right-handed alpha
Helix 38	AE2	F	395	420	Right-handed alpha

There are 22 sheets in PDB entry 8QPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	84	89	parallel
Strand 3	A	74	78	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	169	parallel
Strand 3	A	151	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	181	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 17 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	805	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	767	778	anti-parallel
Strand 4	A	733	744	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	591	600	anti-parallel
Strand 9	A	564	580	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	484	494	anti-parallel
Strand 13	A	466	475	anti-parallel
Strand 14	A	455	463	anti-parallel
Strand 15	A	438	446	anti-parallel
Strand 16	A	425	432	anti-parallel
Strand 17	F	596	602	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	387	390	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	181	185	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	292	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	314	319	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	103	107	anti-parallel
Strand 3	C	171	183	anti-parallel
Strand 4	C	157	168	anti-parallel
Strand 5	C	146	148	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	103	107	anti-parallel
Strand 3	C	171	183	anti-parallel
Strand 4	C	186	187	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	140	143	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	38	first strand
Strand 2	F	28	32	anti-parallel
Strand 3	F	423	425	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	446	first strand
Strand 2	F	451	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QPV