Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQ5 entry

There are 3 chains in PDB entry 8QQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 179PHE 399
B
 LYS 181PHE 399
C
 PHE 184PHE 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8QQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
253 263Right-handed alpha
Helix 2
AA2
A
296 306Right-handed alpha
Helix 3
AA3
A
321 325Right-handed 310
Helix 4
AA4
A
327 338Right-handed alpha
Helix 5
AA5
A
348 352Right-handed alpha
Helix 6
AA6
A
373 387Right-handed alpha
Helix 7
AA7
B
253 263Right-handed alpha
Helix 8
AA8
B
296 306Right-handed alpha
Helix 9
AA9
B
321 325Right-handed 310
Helix 10
AB1
B
327 338Right-handed alpha
Helix 11
AB2
B
348 352Right-handed alpha
Helix 12
AB3
B
373 387Right-handed alpha
Helix 13
AB4
C
254 263Right-handed alpha
Helix 14
AB5
C
279 283Right-handed 310
Helix 15
AB6
C
296 306Right-handed alpha
Helix 16
AB7
C
321 325Right-handed 310
Helix 17
AB8
C
327 338Right-handed alpha
Helix 18
AB9
C
348 352Right-handed alpha
Helix 19
AC1
C
373 387Right-handed alpha
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There are 6 sheets in PDB entry 8QQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 197first strand
Strand 2
A
200 207anti-parallel
Strand 3
A
244 250anti-parallel
Strand 4
A
233 239anti-parallel
Strand 5
A
218 224anti-parallel
Strand 6
A
268 271anti-parallel
Strand 7
A
186 197anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 347first strand
Strand 2
A
312 319parallel
Strand 3
A
286 292parallel
Strand 4
A
366 372parallel
Strand 5
A
391 397parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 195first strand
Strand 2
B
200 207anti-parallel
Strand 3
B
244 250anti-parallel
Strand 4
B
233 239anti-parallel
Strand 5
B
218 224anti-parallel
Strand 6
B
268 271anti-parallel
Strand 7
B
186 195anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 347first strand
Strand 2
B
312 319parallel
Strand 3
B
286 292parallel
Strand 4
B
366 372parallel
Strand 5
B
391 397parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 275first strand
Strand 2
C
218 224anti-parallel
Strand 3
C
268 271anti-parallel
Strand 4
C
186 197anti-parallel
Strand 5
C
200 207anti-parallel
Strand 6
C
244 250anti-parallel
Strand 7
C
233 239anti-parallel
Strand 8
C
218 224anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 347first strand
Strand 2
C
312 319parallel
Strand 3
C
286 292parallel
Strand 4
C
365 372parallel
Strand 5
C
391 397parallel
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