Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQ7 entry

There is 1 chain in PDB entry 8QQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8QQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 28Right-handed alpha
Helix 2
AA2
A
34 50Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
61 88Right-handed alpha
Helix 5
AA5
A
96 120Right-handed alpha
Helix 6
AA6
A
122 147Right-handed alpha
Helix 7
AA7
A
147 152Right-handed alpha
Helix 8
AA8
A
155 178Right-handed alpha
Helix 9
AA9
A
178 184Right-handed alpha
Helix 10
AB1
A
253 263Right-handed alpha
Helix 11
AB2
A
296 305Right-handed alpha
Helix 12
AB3
A
327 338Right-handed alpha
Helix 13
AB4
A
372 387Right-handed alpha
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There are 2 sheets in PDB entry 8QQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 196first strand
Strand 2
A
200 211anti-parallel
Strand 3
A
233 250anti-parallel
Strand 4
A
218 224anti-parallel
Strand 5
A
268 271anti-parallel
Strand 6
A
186 196anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
313 318parallel
Strand 3
A
287 292parallel
Strand 4
A
366 371parallel
Strand 5
A
391 396parallel
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