Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQE entry

There are 4 chains in PDB entry 8QQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28LYS 339
B
 ILE 81LYS 339
C
 PRO 2402SER 2414
D
 VAL 1405PRO 1409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8QQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
48 54Right-handed alpha
Helix 4
AA4
A
55 60Right-handed alpha
Helix 5
AA5
A
66 82Right-handed alpha
Helix 6
AA6
A
88 96Right-handed alpha
Helix 7
AA7
A
105 113Right-handed alpha
Helix 8
AA8
A
131 143Right-handed alpha
Helix 9
AA9
A
147 151Right-handed 310
Helix 10
AB1
A
166 177Right-handed alpha
Helix 11
AB2
A
180 187Right-handed alpha
Helix 12
AB3
A
195 213Right-handed alpha
Helix 13
AB4
A
226 233Right-handed alpha
Helix 14
AB5
A
238 260Right-handed alpha
Helix 15
AB6
A
289 297Right-handed alpha
Helix 16
AB7
A
321 323Right-handed 310
Helix 17
AB8
B
87 96Right-handed alpha
Helix 18
AB9
B
105 113Right-handed alpha
Helix 19
AC1
B
131 143Right-handed alpha
Helix 20
AC2
B
147 151Right-handed 310
Helix 21
AC3
B
166 177Right-handed alpha
Helix 22
AC4
B
180 187Right-handed alpha
Helix 23
AC5
B
195 213Right-handed alpha
Helix 24
AC6
B
226 233Right-handed alpha
Helix 25
AC7
B
238 260Right-handed alpha
Helix 26
AC8
B
289 297Right-handed alpha
Helix 27
AC9
B
321 323Right-handed 310
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There are 5 sheets in PDB entry 8QQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
155 160parallel
Strand 4
B
217 223parallel
Strand 5
B
263 268parallel
Strand 6
B
120 126parallel
Strand 7
B
299 305parallel
Strand 8
B
310 315anti-parallel
Strand 9
B
325 331anti-parallel
Strand 10
B
334 336anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
116 117anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
155 160parallel
Strand 3
A
217 223parallel
Strand 4
A
263 268parallel
Strand 5
A
120 126parallel
Strand 6
A
299 305parallel
Strand 7
A
310 315anti-parallel
Strand 8
A
325 331anti-parallel
Strand 9
A
334 336anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
116 117anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
286 287anti-parallel
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