Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQF entry

There are 4 chains in PDB entry 8QQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 556MET 676
C
 SER 556LYS 677
B
 ASP 255GLU 266
D
 ASP 206GLU 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8QQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
566 571Right-handed alpha
Helix 2
AA2
A
663 676Right-handed alpha
Helix 3
AA3
C
566 572Right-handed alpha
Helix 4
AA4
C
663 677Right-handed alpha
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There are 2 sheets in PDB entry 8QQF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
614 622anti-parallel
Strand 3
A
601 607anti-parallel
Strand 4
A
590 597anti-parallel
Strand 5
A
577 584anti-parallel
Strand 6
A
651 660anti-parallel
Strand 7
A
638 646anti-parallel
Strand 8
A
626 632anti-parallel
Strand 9
B
256 261anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
563 565first strand
Strand 2
C
614 622anti-parallel
Strand 3
C
601 607anti-parallel
Strand 4
C
590 597anti-parallel
Strand 5
C
577 584anti-parallel
Strand 6
C
652 660anti-parallel
Strand 7
C
638 645anti-parallel
Strand 8
C
626 632anti-parallel
Strand 9
D
207 212anti-parallel
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