Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQG entry

There are 3 chains in PDB entry 8QQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 448PRO 721
B
 ASP 447LEU 720
C
 ASP 447LEU 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8QQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
490 505Right-handed alpha
Helix 2
AA2
A
536 542Right-handed alpha
Helix 3
AA3
A
548 569Right-handed alpha
Helix 4
AA4
A
577 579Right-handed 310
Helix 5
AA5
A
620 626Right-handed alpha
Helix 6
AA6
A
633 651Right-handed alpha
Helix 7
AA7
A
660 670Right-handed alpha
Helix 8
AA8
A
676 680Right-handed 310
Helix 9
AA9
A
685 696Right-handed alpha
Helix 10
AB1
A
705 719Right-handed alpha
Helix 11
AB2
B
490 505Right-handed alpha
Helix 12
AB3
B
536 542Right-handed alpha
Helix 13
AB4
B
548 569Right-handed alpha
Helix 14
AB5
B
620 626Right-handed alpha
Helix 15
AB6
B
633 651Right-handed alpha
Helix 16
AB7
B
660 670Right-handed alpha
Helix 17
AB8
B
676 680Right-handed 310
Helix 18
AB9
B
685 696Right-handed alpha
Helix 19
AC1
B
705 719Right-handed alpha
Helix 20
AC2
C
490 505Right-handed alpha
Helix 21
AC3
C
536 542Right-handed alpha
Helix 22
AC4
C
548 569Right-handed alpha
Helix 23
AC5
C
577 579Right-handed 310
Helix 24
AC6
C
620 626Right-handed alpha
Helix 25
AC7
C
633 651Right-handed alpha
Helix 26
AC8
C
660 670Right-handed alpha
Helix 27
AC9
C
676 680Right-handed 310
Helix 28
AD1
C
685 696Right-handed alpha
Helix 29
AD2
C
705 719Right-handed alpha
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There are 6 sheets in PDB entry 8QQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 463first strand
Strand 2
A
469 474anti-parallel
Strand 3
A
478 483anti-parallel
Strand 4
A
525 529anti-parallel
Strand 5
A
515 519anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
581 584anti-parallel
Strand 3
A
588 591anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 465first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
478 483anti-parallel
Strand 4
B
525 529anti-parallel
Strand 5
B
515 519anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
533 535first strand
Strand 2
B
581 584anti-parallel
Strand 3
B
588 591anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 465first strand
Strand 2
C
468 474anti-parallel
Strand 3
C
478 483anti-parallel
Strand 4
C
525 529anti-parallel
Strand 5
C
515 519anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
533 535first strand
Strand 2
C
581 584anti-parallel
Strand 3
C
588 591anti-parallel
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