Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQK entry

There are 4 chains in PDB entry 8QQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 661
B
 SER 23GLY 285
C
 MET 1MET 204
D
 SER 11HIS 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8QQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
41 48Right-handed alpha
Helix 3
AA3
A
53 87Right-handed alpha
Helix 4
AA4
A
95 131Right-handed alpha
Helix 5
AA5
A
138 163Right-handed alpha
Helix 6
AA6
A
173 178Right-handed alpha
Helix 7
AA7
A
185 215Right-handed alpha
Helix 8
AA8
A
221 225Right-handed 310
Helix 9
AA9
A
226 259Right-handed alpha
Helix 10
AB1
A
271 306Right-handed alpha
Helix 11
AB2
A
312 327Right-handed alpha
Helix 12
AB3
A
328 329Right-handed 310
Helix 13
AB4
A
330 336Right-handed 310
Helix 14
AB5
A
342 370Right-handed alpha
Helix 15
AB6
A
378 403Right-handed alpha
Helix 16
AB7
A
403 411Right-handed alpha
Helix 17
AB8
A
413 445Right-handed alpha
Helix 18
AB9
A
449 477Right-handed alpha
Helix 19
AC1
A
488 490Right-handed 310
Helix 20
AC2
A
491 522Right-handed alpha
Helix 21
AC3
A
562 570Right-handed alpha
Helix 22
AC4
A
590 608Right-handed alpha
Helix 23
AC5
A
613 630Right-handed alpha
Helix 24
AC6
A
639 658Right-handed alpha
Helix 25
AC7
B
34 69Right-handed alpha
Helix 26
AC8
B
86 114Right-handed alpha
Helix 27
AC9
B
227 239Right-handed alpha
Helix 28
AD1
B
247 255Right-handed alpha
Helix 29
AD2
B
272 282Right-handed alpha
Helix 30
AD3
C
22 51Right-handed alpha
Helix 31
AD4
C
65 90Right-handed alpha
Helix 32
AD5
C
97 126Right-handed alpha
Helix 33
AD6
C
133 168Right-handed alpha
Helix 34
AD7
C
170 198Right-handed alpha
Helix 35
AD8
C
198 203Right-handed alpha
Helix 36
AD9
D
14 39Right-handed alpha
Helix 37
AE1
D
42 65Right-handed alpha
Helix 38
AE2
D
75 105Right-handed alpha
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There are 3 sheets in PDB entry 8QQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
635 638anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
127 133parallel
Strand 4
B
138 142anti-parallel
Strand 5
B
147 150anti-parallel
Strand 6
B
264 266anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
219 225parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
172 175anti-parallel
Strand 5
B
182 185anti-parallel
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