Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QQM entry

There are 5 chains in PDB entry 8QQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 212LEU 433
B
 LEU 226ASN 479
C
 LEU 218HIS 460
D
 LEU 212LEU 433
E
 LEU 220PHE 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8QQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 230Right-handed alpha
Helix 2
AA2
A
231 235Right-handed 310
Helix 3
AA3
A
241 264Right-handed alpha
Helix 4
AA4
A
272 300Right-handed alpha
Helix 5
AA5
A
309 317Right-handed alpha
Helix 6
AA6
A
319 324Right-handed 310
Helix 7
AA7
A
371 431Right-handed alpha
Helix 8
AA8
B
227 232Right-handed alpha
Helix 9
AA9
B
232 242Right-handed alpha
Helix 10
AB1
B
243 248Right-handed 310
Helix 11
AB2
B
255 276Right-handed alpha
Helix 12
AB3
B
286 314Right-handed alpha
Helix 13
AB4
B
323 332Right-handed alpha
Helix 14
AB5
B
332 338Right-handed alpha
Helix 15
AB6
B
417 478Right-handed alpha
Helix 16
AB7
C
219 238Right-handed alpha
Helix 17
AB8
C
239 241Right-handed 310
Helix 18
AB9
C
242 246Right-handed 310
Helix 19
AC1
C
247 268Right-handed alpha
Helix 20
AC2
C
278 306Right-handed alpha
Helix 21
AC3
C
315 323Right-handed alpha
Helix 22
AC4
C
325 331Right-handed alpha
Helix 23
AC5
C
399 460Right-handed alpha
Helix 24
AC6
D
213 218Right-handed alpha
Helix 25
AC7
D
218 232Right-handed alpha
Helix 26
AC8
D
233 235Right-handed 310
Helix 27
AC9
D
241 264Right-handed alpha
Helix 28
AD1
D
272 300Right-handed alpha
Helix 29
AD2
D
309 317Right-handed alpha
Helix 30
AD3
D
319 324Right-handed 310
Helix 31
AD4
D
371 433Right-handed alpha
Helix 32
AD5
E
221 226Right-handed alpha
Helix 33
AD6
E
226 235Right-handed alpha
Helix 34
AD7
E
236 243Right-handed 310
Helix 35
AD8
E
250 271Right-handed alpha
Helix 36
AD9
E
281 309Right-handed alpha
Helix 37
AE1
E
318 327Right-handed alpha
Helix 38
AE2
E
411 470Right-handed alpha
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There are no sheets in PDB entry 8QQM
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