Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QQS entry

There are 6 chains in PDB entry 8QQS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	ASN 524
B	SER 9	ILE 804
C	ALA 5	ASN 524
D	LYS 11	ILE 802
E	T 1	T 30
F	A 1	A 30

There are 93 helices in PDB entry 8QQS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	42	56	Right-handed alpha
Helix 3	AA3	A	66	77	Right-handed alpha
Helix 4	AA4	A	81	94	Right-handed alpha
Helix 5	AA5	A	128	134	Right-handed alpha
Helix 6	AA6	A	135	136	Right-handed 310
Helix 7	AA7	A	137	141	Right-handed 310
Helix 8	AA8	A	164	170	Right-handed alpha
Helix 9	AA9	A	186	200	Right-handed alpha
Helix 10	AB1	A	204	212	Right-handed alpha
Helix 11	AB2	A	226	236	Right-handed alpha
Helix 12	AB3	A	269	283	Right-handed alpha
Helix 13	AB4	A	313	324	Right-handed alpha
Helix 14	AB5	A	346	389	Right-handed alpha
Helix 15	AB6	A	389	400	Right-handed alpha
Helix 16	AB7	A	402	413	Right-handed alpha
Helix 17	AB8	A	417	425	Right-handed alpha
Helix 18	AB9	A	451	460	Right-handed alpha
Helix 19	AC1	A	462	466	Right-handed 310
Helix 20	AC2	A	467	494	Right-handed alpha
Helix 21	AC3	A	494	514	Right-handed alpha
Helix 22	AC4	B	10	22	Right-handed alpha
Helix 23	AC5	B	22	28	Right-handed alpha
Helix 24	AC6	B	33	53	Right-handed alpha
Helix 25	AC7	B	121	126	Right-handed alpha
Helix 26	AC8	B	183	198	Right-handed alpha
Helix 27	AC9	B	221	230	Right-handed alpha
Helix 28	AD1	B	279	301	Right-handed alpha
Helix 29	AD2	B	301	307	Right-handed alpha
Helix 30	AD3	B	343	364	Right-handed alpha
Helix 31	AD4	B	364	386	Right-handed alpha
Helix 32	AD5	B	425	435	Right-handed alpha
Helix 33	AD6	B	457	462	Right-handed 310
Helix 34	AD7	B	463	474	Right-handed alpha
Helix 35	AD8	B	484	488	Right-handed 310
Helix 36	AD9	B	500	518	Right-handed alpha
Helix 37	AE1	B	518	525	Right-handed alpha
Helix 38	AE2	B	548	561	Right-handed alpha
Helix 39	AE3	B	576	597	Right-handed alpha
Helix 40	AE4	B	602	612	Right-handed alpha
Helix 41	AE5	B	616	622	Right-handed alpha
Helix 42	AE6	B	623	640	Right-handed alpha
Helix 43	AE7	B	678	683	Right-handed alpha
Helix 44	AE8	B	685	697	Right-handed alpha
Helix 45	AE9	B	718	731	Right-handed alpha
Helix 46	AF1	B	746	755	Right-handed alpha
Helix 47	AF2	B	769	782	Right-handed alpha
Helix 48	AF3	B	785	801	Right-handed alpha
Helix 49	AF4	C	13	31	Right-handed alpha
Helix 50	AF5	C	42	56	Right-handed alpha
Helix 51	AF6	C	66	77	Right-handed alpha
Helix 52	AF7	C	84	94	Right-handed alpha
Helix 53	AF8	C	128	134	Right-handed alpha
Helix 54	AF9	C	164	170	Right-handed alpha
Helix 55	AG1	C	186	200	Right-handed alpha
Helix 56	AG2	C	204	212	Right-handed alpha
Helix 57	AG3	C	226	236	Right-handed alpha
Helix 58	AG4	C	269	283	Right-handed alpha
Helix 59	AG5	C	313	324	Right-handed alpha
Helix 60	AG6	C	346	389	Right-handed alpha
Helix 61	AG7	C	389	400	Right-handed alpha
Helix 62	AG8	C	402	413	Right-handed alpha
Helix 63	AG9	C	418	429	Right-handed alpha
Helix 64	AH1	C	451	460	Right-handed alpha
Helix 65	AH2	C	462	466	Right-handed 310
Helix 66	AH3	C	467	494	Right-handed alpha
Helix 67	AH4	C	494	513	Right-handed alpha
Helix 68	AH5	D	12	22	Right-handed alpha
Helix 69	AH6	D	22	27	Right-handed alpha
Helix 70	AH7	D	33	53	Right-handed alpha
Helix 71	AH8	D	122	126	Right-handed alpha
Helix 72	AH9	D	183	198	Right-handed alpha
Helix 73	AI1	D	221	231	Right-handed alpha
Helix 74	AI2	D	279	301	Right-handed alpha
Helix 75	AI3	D	301	307	Right-handed alpha
Helix 76	AI4	D	344	364	Right-handed alpha
Helix 77	AI5	D	364	386	Right-handed alpha
Helix 78	AI6	D	425	435	Right-handed alpha
Helix 79	AI7	D	463	474	Right-handed alpha
Helix 80	AI8	D	484	488	Right-handed 310
Helix 81	AI9	D	500	518	Right-handed alpha
Helix 82	AJ1	D	518	524	Right-handed alpha
Helix 83	AJ2	D	548	561	Right-handed alpha
Helix 84	AJ3	D	576	597	Right-handed alpha
Helix 85	AJ4	D	602	612	Right-handed alpha
Helix 86	AJ5	D	616	622	Right-handed alpha
Helix 87	AJ6	D	622	640	Right-handed alpha
Helix 88	AJ7	D	678	683	Right-handed alpha
Helix 89	AJ8	D	685	697	Right-handed alpha
Helix 90	AJ9	D	718	731	Right-handed alpha
Helix 91	AK1	D	746	755	Right-handed alpha
Helix 92	AK2	D	769	782	Right-handed alpha
Helix 93	AK3	D	785	801	Right-handed alpha

There are 28 sheets in PDB entry 8QQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	B	762	766	parallel
Strand 3	B	527	529	anti-parallel
Strand 4	B	493	495	parallel
Strand 5	B	419	423	parallel
Strand 6	B	441	445	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	179	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	333	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	222	223	anti-parallel
Strand 4	A	520	521	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	257	260	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	293	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	342	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	447	449	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	145	first strand
Strand 2	B	127	136	anti-parallel
Strand 3	B	166	171	anti-parallel
Strand 4	B	69	72	anti-parallel
Strand 5	B	58	63	anti-parallel
Strand 6	B	202	207	parallel
Strand 7	B	212	216	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	246	247	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	319	326	anti-parallel
Strand 4	B	264	270	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	735	738	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	567	first strand
Strand 2	B	706	708	anti-parallel
Strand 3	B	713	715	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	654	first strand
Strand 2	B	659	668	anti-parallel
Strand 3	B	671	676	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	D	762	766	parallel
Strand 3	D	527	530	anti-parallel
Strand 4	D	493	495	parallel
Strand 5	D	419	423	parallel
Strand 6	D	441	445	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	179	182	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	333	first strand
Strand 2	C	237	243	anti-parallel
Strand 3	C	222	223	anti-parallel
Strand 4	C	520	521	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	303	307	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	342	344	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	416	first strand
Strand 2	C	447	449	anti-parallel
Strand 3	C	442	443	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	145	first strand
Strand 2	D	127	136	anti-parallel
Strand 3	D	165	171	anti-parallel
Strand 4	D	69	72	anti-parallel
Strand 5	D	58	63	anti-parallel
Strand 6	D	202	207	parallel
Strand 7	D	212	216	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	246	247	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	319	326	anti-parallel
Strand 4	D	264	270	parallel
Strand 5	D	274	275	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	735	738	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	567	first strand
Strand 2	D	706	708	anti-parallel
Strand 3	D	713	715	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	654	first strand
Strand 2	D	659	668	anti-parallel
Strand 3	D	671	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QQS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQS