Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QQU entry

There are 4 chains in PDB entry 8QQU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ARG 6	ASN 524
D	SER 9	ILE 802
E	T 1	T 16
F	A 1	A 16

There are 47 helices in PDB entry 8QQU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	13	31	Right-handed alpha
Helix 2	AA2	C	42	56	Right-handed alpha
Helix 3	AA3	C	66	77	Right-handed alpha
Helix 4	AA4	C	84	94	Right-handed alpha
Helix 5	AA5	C	128	134	Right-handed alpha
Helix 6	AA6	C	135	136	Right-handed 310
Helix 7	AA7	C	137	141	Right-handed 310
Helix 8	AA8	C	164	170	Right-handed alpha
Helix 9	AA9	C	186	200	Right-handed alpha
Helix 10	AB1	C	204	212	Right-handed alpha
Helix 11	AB2	C	226	236	Right-handed alpha
Helix 12	AB3	C	269	283	Right-handed alpha
Helix 13	AB4	C	313	324	Right-handed alpha
Helix 14	AB5	C	346	389	Right-handed alpha
Helix 15	AB6	C	389	400	Right-handed alpha
Helix 16	AB7	C	402	413	Right-handed alpha
Helix 17	AB8	C	418	429	Right-handed alpha
Helix 18	AB9	C	451	460	Right-handed alpha
Helix 19	AC1	C	462	466	Right-handed 310
Helix 20	AC2	C	467	494	Right-handed alpha
Helix 21	AC3	C	494	513	Right-handed alpha
Helix 22	AC4	D	10	22	Right-handed alpha
Helix 23	AC5	D	22	27	Right-handed alpha
Helix 24	AC6	D	33	52	Right-handed alpha
Helix 25	AC7	D	121	127	Right-handed alpha
Helix 26	AC8	D	183	198	Right-handed alpha
Helix 27	AC9	D	221	231	Right-handed alpha
Helix 28	AD1	D	279	301	Right-handed alpha
Helix 29	AD2	D	301	307	Right-handed alpha
Helix 30	AD3	D	343	364	Right-handed alpha
Helix 31	AD4	D	364	385	Right-handed alpha
Helix 32	AD5	D	425	435	Right-handed alpha
Helix 33	AD6	D	463	474	Right-handed alpha
Helix 34	AD7	D	484	488	Right-handed 310
Helix 35	AD8	D	500	518	Right-handed alpha
Helix 36	AD9	D	518	524	Right-handed alpha
Helix 37	AE1	D	548	561	Right-handed alpha
Helix 38	AE2	D	576	597	Right-handed alpha
Helix 39	AE3	D	602	612	Right-handed alpha
Helix 40	AE4	D	616	622	Right-handed alpha
Helix 41	AE5	D	622	640	Right-handed alpha
Helix 42	AE6	D	678	683	Right-handed alpha
Helix 43	AE7	D	685	697	Right-handed alpha
Helix 44	AE8	D	718	731	Right-handed alpha
Helix 45	AE9	D	746	755	Right-handed alpha
Helix 46	AF1	D	769	782	Right-handed alpha
Helix 47	AF2	D	785	801	Right-handed alpha

There are 14 sheets in PDB entry 8QQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	D	763	766	parallel
Strand 3	D	527	529	anti-parallel
Strand 4	D	493	495	parallel
Strand 5	D	419	423	parallel
Strand 6	D	441	445	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	124	127	anti-parallel
Strand 3	C	103	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	179	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	333	first strand
Strand 2	C	237	243	anti-parallel
Strand 3	C	222	223	anti-parallel
Strand 4	C	520	521	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	303	307	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	342	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	416	first strand
Strand 2	C	447	448	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	129	136	anti-parallel
Strand 4	D	165	170	anti-parallel
Strand 5	D	69	71	anti-parallel
Strand 6	D	58	63	anti-parallel
Strand 7	D	202	207	parallel
Strand 8	D	212	216	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	246	247	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	319	326	anti-parallel
Strand 4	D	264	270	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	735	738	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	567	first strand
Strand 2	D	706	709	anti-parallel
Strand 3	D	712	715	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	654	first strand
Strand 2	D	659	668	anti-parallel
Strand 3	D	671	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QQU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QQU