Analysis of interatomic Contacts of Structural Units in PDB entry:
8QRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QRH entry

There are 6 chains in PDB entry 8QRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 492
B	SER 1	LEU 492
C	SER 1	LEU 492
D	VAL 2	PRO 72
E	VAL 2	PRO 72
F	VAL 2	PRO 72

There are 50 helices in PDB entry 8QRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	177	179	Right-handed 310
Helix 5	AA5	A	188	191	Right-handed 310
Helix 6	AA6	A	217	222	Right-handed alpha
Helix 7	AA7	A	237	240	Right-handed 310
Helix 8	AA8	A	260	268	Right-handed alpha
Helix 9	AA9	A	269	271	Right-handed 310
Helix 10	AB1	A	308	310	Right-handed 310
Helix 11	AB2	A	397	417	Right-handed alpha
Helix 12	AB3	A	418	423	Right-handed 310
Helix 13	AB4	A	428	448	Right-handed alpha
Helix 14	AB5	A	453	467	Right-handed alpha
Helix 15	AB6	A	473	476	Right-handed 310
Helix 16	AB7	A	477	492	Right-handed alpha
Helix 17	AB8	B	2	6	Right-handed 310
Helix 18	AB9	B	82	86	Right-handed 310
Helix 19	AC1	B	177	179	Right-handed 310
Helix 20	AC2	B	187	191	Right-handed 310
Helix 21	AC3	B	193	195	Right-handed 310
Helix 22	AC4	B	217	223	Right-handed alpha
Helix 23	AC5	B	237	240	Right-handed 310
Helix 24	AC6	B	260	268	Right-handed alpha
Helix 25	AC7	B	397	417	Right-handed alpha
Helix 26	AC8	B	418	423	Right-handed 310
Helix 27	AC9	B	427	450	Right-handed alpha
Helix 28	AD1	B	453	471	Right-handed alpha
Helix 29	AD2	B	474	492	Right-handed alpha
Helix 30	AD3	C	1	6	Right-handed 310
Helix 31	AD4	C	82	87	Right-handed 310
Helix 32	AD5	C	100	104	Right-handed 310
Helix 33	AD6	C	188	191	Right-handed 310
Helix 34	AD7	C	193	195	Right-handed 310
Helix 35	AD8	C	217	222	Right-handed alpha
Helix 36	AD9	C	237	240	Right-handed 310
Helix 37	AE1	C	260	268	Right-handed alpha
Helix 38	AE2	C	397	420	Right-handed alpha
Helix 39	AE3	C	427	448	Right-handed alpha
Helix 40	AE4	C	453	470	Right-handed alpha
Helix 41	AE5	C	473	492	Right-handed alpha
Helix 42	AE6	D	20	52	Right-handed alpha
Helix 43	AE7	D	56	71	Right-handed alpha
Helix 44	AE8	E	26	54	Right-handed alpha
Helix 45	AE9	E	56	71	Right-handed alpha
Helix 46	AF1	F	6	10	Right-handed 310
Helix 47	AF2	F	20	28	Right-handed alpha
Helix 48	AF3	F	29	39	Right-handed alpha
Helix 49	AF4	F	39	54	Right-handed alpha
Helix 50	AF5	F	58	71	Right-handed alpha

There are 27 sheets in PDB entry 8QRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	30	35	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	14	first strand
Strand 2	A	30	35	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	280	282	anti-parallel
Strand 5	A	273	277	anti-parallel
Strand 6	A	212	216	anti-parallel
Strand 7	A	197	201	anti-parallel
Strand 8	A	126	131	anti-parallel
Strand 9	A	54	60	anti-parallel
Strand 10	A	227	228	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	181	186	anti-parallel
Strand 4	A	172	175	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	73	first strand
Strand 2	A	109	121	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	363	365	anti-parallel
Strand 3	A	368	369	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	383	385	anti-parallel
Strand 3	A	388	390	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	393	394	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	B	30	35	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	30	35	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	280	282	anti-parallel
Strand 5	B	275	277	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	181	185	anti-parallel
Strand 4	B	172	175	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	55	60	anti-parallel
Strand 5	B	227	228	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	72	first strand
Strand 2	B	109	121	anti-parallel
Strand 3	B	90	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	254	256	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	363	365	anti-parallel
Strand 3	B	368	369	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	388	394	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	14	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	51	anti-parallel
Strand 4	C	138	145	anti-parallel
Strand 5	C	161	165	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	14	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	51	anti-parallel
Strand 4	C	280	282	anti-parallel
Strand 5	C	273	277	anti-parallel
Strand 6	C	212	216	anti-parallel
Strand 7	C	197	202	anti-parallel
Strand 8	C	126	131	anti-parallel
Strand 9	C	54	60	anti-parallel
Strand 10	C	227	228	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	186	187	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	72	first strand
Strand 2	C	109	121	anti-parallel
Strand 3	C	90	99	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	180	184	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	254	256	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	388	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QRH