Analysis of interatomic Contacts of Structural Units in PDB entry:
8QRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QRI entry

There are 2 chains in PDB entry 8QRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 38LEU 3859
A
 GLU 2367ALA 2523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are218 helices in PDB entry 8QRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
38 43Right-handed alpha
Helix 2
AA2
C
44 46Right-handed 310
Helix 3
AA3
C
56 61Right-handed alpha
Helix 4
AA4
C
61 73Right-handed alpha
Helix 5
AA5
C
85 91Right-handed 310
Helix 6
AA6
C
92 99Right-handed alpha
Helix 7
AA7
C
106 109Right-handed 310
Helix 8
AA8
C
110 119Right-handed alpha
Helix 9
AA9
C
120 121Right-handed 310
Helix 10
AB1
C
128 128Right-handed 310
Helix 11
AB2
C
129 142Right-handed alpha
Helix 12
AB3
C
150 152Right-handed 310
Helix 13
AB4
C
153 158Right-handed alpha
Helix 14
AB5
C
159 161Right-handed 310
Helix 15
AB6
C
226 236Right-handed alpha
Helix 16
AB7
C
237 243Right-handed 310
Helix 17
AB8
C
246 249Right-handed 310
Helix 18
AB9
C
250 255Right-handed alpha
Helix 19
AC1
C
278 296Right-handed alpha
Helix 20
AC2
C
307 320Right-handed alpha
Helix 21
AC3
C
321 323Right-handed 310
Helix 22
AC4
C
327 340Right-handed alpha
Helix 23
AC5
C
342 347Right-handed alpha
Helix 24
AC6
C
348 353Right-handed 310
Helix 25
AC7
C
354 358Right-handed 310
Helix 26
AC8
C
366 387Right-handed alpha
Helix 27
AC9
C
391 406Right-handed alpha
Helix 28
AD1
C
412 435Right-handed alpha
Helix 29
AD2
C
438 463Right-handed alpha
Helix 30
AD3
C
464 467Right-handed 310
Helix 31
AD4
C
542 566Right-handed alpha
Helix 32
AD5
C
581 604Right-handed alpha
Helix 33
AD6
C
627 638Right-handed alpha
Helix 34
AD7
C
643 653Right-handed alpha
Helix 35
AD8
C
654 663Right-handed alpha
Helix 36
AD9
C
668 678Right-handed alpha
Helix 37
AE1
C
679 682Right-handed 310
Helix 38
AE2
C
683 697Right-handed alpha
Helix 39
AE3
C
698 700Right-handed 310
Helix 40
AE4
C
703 724Right-handed alpha
Helix 41
AE5
C
724 733Right-handed alpha
Helix 42
AE6
C
735 748Right-handed alpha
Helix 43
AE7
C
753 768Right-handed alpha
Helix 44
AE8
C
773 780Right-handed alpha
Helix 45
AE9
C
782 795Right-handed alpha
Helix 46
AF1
C
799 811Right-handed alpha
Helix 47
AF2
C
820 826Right-handed 310
Helix 48
AF3
C
827 836Right-handed alpha
Helix 49
AF4
C
838 854Right-handed alpha
Helix 50
AF5
C
857 866Right-handed alpha
Helix 51
AF6
C
868 880Right-handed alpha
Helix 52
AF7
C
884 898Right-handed alpha
Helix 53
AF8
C
899 903Right-handed 310
Helix 54
AF9
C
929 932Right-handed 310
Helix 55
AG1
C
939 952Right-handed alpha
Helix 56
AG2
C
956 974Right-handed alpha
Helix 57
AG3
C
980 989Right-handed alpha
Helix 58
AG4
C
1004 1008Right-handed 310
Helix 59
AG5
C
1012 1031Right-handed alpha
Helix 60
AG6
C
1034 1057Right-handed alpha
Helix 61
AG7
C
1063 1067Right-handed 310
Helix 62
AG8
C
1073 1077Right-handed 310
Helix 63
AG9
C
1090 1102Right-handed alpha
Helix 64
AH1
C
1104 1106Right-handed 310
Helix 65
AH2
C
1107 1127Right-handed alpha
Helix 66
AH3
C
1128 1135Right-handed alpha
Helix 67
AH4
C
1136 1148Right-handed alpha
Helix 68
AH5
C
1149 1151Right-handed 310
Helix 69
AH6
C
1153 1171Right-handed alpha
Helix 70
AH7
C
1172 1194Right-handed alpha
Helix 71
AH8
C
1201 1219Right-handed alpha
Helix 72
AH9
C
1227 1248Right-handed alpha
Helix 73
AI1
C
1253 1271Right-handed alpha
Helix 74
AI2
C
1274 1280Right-handed alpha
Helix 75
AI3
C
1281 1287Right-handed 310
Helix 76
AI4
C
1296 1300Right-handed 310
Helix 77
AI5
C
1301 1318Right-handed alpha
Helix 78
AI6
C
1331 1345Right-handed alpha
Helix 79
AI7
C
1353 1358Right-handed alpha
Helix 80
AI8
C
1362 1376Right-handed alpha
Helix 81
AI9
C
1377 1378Right-handed 310
Helix 82
AJ1
C
1379 1381Right-handed 310
Helix 83
AJ2
C
1382 1395Right-handed alpha
Helix 84
AJ3
C
1398 1413Right-handed alpha
Helix 85
AJ4
C
1418 1424Right-handed alpha
Helix 86
AJ5
C
1427 1435Right-handed alpha
Helix 87
AJ6
C
1441 1454Right-handed alpha
Helix 88
AJ7
C
1455 1459Right-handed 310
Helix 89
AJ8
C
1460 1482Right-handed alpha
Helix 90
AJ9
C
1510 1524Right-handed alpha
Helix 91
AK1
C
1528 1530Right-handed 310
Helix 92
AK2
C
1531 1547Right-handed alpha
Helix 93
AK3
C
1554 1565Right-handed alpha
Helix 94
AK4
C
1568 1573Right-handed alpha
Helix 95
AK5
C
1575 1579Right-handed 310
Helix 96
AK6
C
1581 1594Right-handed alpha
Helix 97
AK7
C
1597 1606Right-handed alpha
Helix 98
AK8
C
1608 1613Right-handed alpha
Helix 99
AK9
C
1636 1653Right-handed alpha
Helix 100
AL1
C
1659 1678Right-handed alpha
Helix 101
AL2
C
1691 1705Right-handed alpha
Helix 102
AL3
C
1710 1716Right-handed alpha
Helix 103
AL4
C
1722 1724Right-handed 310
Helix 104
AL5
C
1725 1740Right-handed alpha
Helix 105
AL6
C
1752 1757Right-handed alpha
Helix 106
AL7
C
1767 1784Right-handed alpha
Helix 107
AL8
C
1807 1817Right-handed alpha
Helix 108
AL9
C
1826 1837Right-handed alpha
Helix 109
AM1
C
1858 1866Right-handed alpha
Helix 110
AM2
C
1867 1870Right-handed 310
Helix 111
AM3
C
1876 1894Right-handed alpha
Helix 112
AM4
C
1900 1909Right-handed alpha
Helix 113
AM5
C
1916 1931Right-handed alpha
Helix 114
AM6
C
1932 1939Right-handed 310
Helix 115
AM7
C
1940 1941Right-handed 310
Helix 116
AM8
C
1942 1953Right-handed alpha
Helix 117
AM9
C
1965 1971Right-handed alpha
Helix 118
AN1
C
1980 1985Right-handed 310
Helix 119
AN2
C
1986 1991Right-handed alpha
Helix 120
AN3
C
2003 2020Right-handed alpha
Helix 121
AN4
C
2091 2106Right-handed alpha
Helix 122
AN5
C
2120 2131Right-handed alpha
Helix 123
AN6
C
2143 2154Right-handed alpha
Helix 124
AN7
C
2163 2181Right-handed alpha
Helix 125
AN8
C
2184 2189Right-handed alpha
Helix 126
AN9
C
2190 2198Right-handed alpha
Helix 127
AO1
C
2199 2205Right-handed 310
Helix 128
AO2
C
2206 2223Right-handed alpha
Helix 129
AO3
C
2237 2254Right-handed alpha
Helix 130
AO4
C
2266 2279Right-handed alpha
Helix 131
AO5
C
2282 2285Right-handed 310
Helix 132
AO6
C
2286 2291Right-handed alpha
Helix 133
AO7
C
2292 2306Right-handed alpha
Helix 134
AO8
C
2319 2335Right-handed alpha
Helix 135
AO9
C
2339 2356Right-handed alpha
Helix 136
AP1
C
2360 2375Right-handed alpha
Helix 137
AP2
C
2388 2403Right-handed alpha
Helix 138
AP3
C
2412 2425Right-handed alpha
Helix 139
AP4
C
2439 2448Right-handed alpha
Helix 140
AP5
C
2451 2463Right-handed alpha
Helix 141
AP6
C
2469 2477Right-handed alpha
Helix 142
AP7
C
2482 2486Right-handed 310
Helix 143
AP8
C
2491 2501Right-handed alpha
Helix 144
AP9
C
2522 2528Right-handed alpha
Helix 145
AQ1
C
2587 2602Right-handed alpha
Helix 146
AQ2
C
2607 2621Right-handed alpha
Helix 147
AQ3
C
2621 2640Right-handed alpha
Helix 148
AQ4
C
2641 2658Right-handed alpha
Helix 149
AQ5
C
2659 2667Right-handed 310
Helix 150
AQ6
C
2670 2680Right-handed alpha
Helix 151
AQ7
C
2691 2700Right-handed alpha
Helix 152
AQ8
C
2702 2718Right-handed alpha
Helix 153
AQ9
C
2742 2755Right-handed alpha
Helix 154
AR1
C
2757 2766Right-handed alpha
Helix 155
AR2
C
2771 2783Right-handed alpha
Helix 156
AR3
C
2785 2805Right-handed alpha
Helix 157
AR4
C
2810 2812Right-handed 310
Helix 158
AR5
C
2813 2831Right-handed alpha
Helix 159
AR6
C
2833 2842Right-handed alpha
Helix 160
AR7
C
2848 2857Right-handed alpha
Helix 161
AR8
C
2863 2869Right-handed alpha
Helix 162
AR9
C
2869 2876Right-handed alpha
Helix 163
AS1
C
2880 2894Right-handed alpha
Helix 164
AS2
C
2903 2920Right-handed alpha
Helix 165
AS3
C
2927 2929Right-handed 310
Helix 166
AS4
C
2930 2952Right-handed alpha
Helix 167
AS5
C
2960 2975Right-handed alpha
Helix 168
AS6
C
2984 3006Right-handed alpha
Helix 169
AS7
C
3027 3051Right-handed alpha
Helix 170
AS8
C
3053 3063Right-handed alpha
Helix 171
AS9
C
3064 3067Right-handed 310
Helix 172
AT1
C
3071 3088Right-handed alpha
Helix 173
AT2
C
3097 3107Right-handed alpha
Helix 174
AT3
C
3116 3132Right-handed alpha
Helix 175
AT4
C
3135 3146Right-handed alpha
Helix 176
AT5
C
3152 3168Right-handed alpha
Helix 177
AT6
C
3172 3190Right-handed alpha
Helix 178
AT7
C
3195 3206Right-handed alpha
Helix 179
AT8
C
3207 3209Right-handed 310
Helix 180
AT9
C
3213 3223Right-handed alpha
Helix 181
AU1
C
3227 3232Right-handed alpha
Helix 182
AU2
C
3234 3243Right-handed alpha
Helix 183
AU3
C
3246 3261Right-handed alpha
Helix 184
AU4
C
3261 3283Right-handed alpha
Helix 185
AU5
C
3294 3308Right-handed alpha
Helix 186
AU6
C
3311 3326Right-handed alpha
Helix 187
AU7
C
3327 3329Right-handed 310
Helix 188
AU8
C
3331 3354Right-handed alpha
Helix 189
AU9
C
3364 3379Right-handed alpha
Helix 190
AV1
C
3416 3426Right-handed alpha
Helix 191
AV2
C
3427 3431Right-handed 310
Helix 192
AV3
C
3433 3452Right-handed alpha
Helix 193
AV4
C
3453 3455Right-handed 310
Helix 194
AV5
C
3466 3471Right-handed alpha
Helix 195
AV6
C
3482 3486Right-handed 310
Helix 196
AV7
C
3535 3553Right-handed alpha
Helix 197
AV8
C
3554 3558Right-handed 310
Helix 198
AV9
C
3559 3564Right-handed alpha
Helix 199
AW1
C
3593 3603Right-handed alpha
Helix 200
AW2
C
3609 3625Right-handed alpha
Helix 201
AW3
C
3630 3645Right-handed alpha
Helix 202
AW4
C
3649 3659Right-handed alpha
Helix 203
AW5
C
3661 3686Right-handed alpha
Helix 204
AW6
C
3732 3746Right-handed alpha
Helix 205
AW7
C
3746 3760Right-handed alpha
Helix 206
AW8
C
3767 3772Right-handed alpha
Helix 207
AW9
C
3772 3785Right-handed alpha
Helix 208
AX1
C
3804 3824Right-handed alpha
Helix 209
AX2
C
3834 3844Right-handed alpha
Helix 210
AX3
C
3844 3849Right-handed alpha
Helix 211
AX4
C
3852 3856Right-handed 310
Helix 212
AX5
A
2369 2383Right-handed alpha
Helix 213
AX6
A
2400 2410Right-handed alpha
Helix 214
AX7
A
2417 2428Right-handed alpha
Helix 215
AX8
A
2428 2435Right-handed alpha
Helix 216
AX9
A
2443 2452Right-handed alpha
Helix 217
AY1
A
2454 2474Right-handed alpha
Helix 218
AY2
A
2512 2521Right-handed alpha
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There are 3 sheets in PDB entry 8QRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
923 927first strand
Strand 2
C
934 938anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3459 3460first strand
Strand 2
C
3496 3505anti-parallel
Strand 3
C
3514 3520anti-parallel
Strand 4
C
3525 3532anti-parallel
Strand 5
C
3581 3585anti-parallel
Strand 6
C
3574 3575anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3590 3592first strand
Strand 2
C
3696 3699anti-parallel
Strand 3
C
3705 3707anti-parallel
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