Analysis of interatomic Contacts of Structural Units in PDB entry:
8QRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QRP entry

There is 1 chain in PDB entry 8QRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 49ASP 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8QRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
49 76Right-handed alpha
Helix 2
AA2
B
76 82Right-handed alpha
Helix 3
AA3
B
82 103Right-handed alpha
Helix 4
AA4
B
103 118Right-handed alpha
Helix 5
AA5
B
120 154Right-handed alpha
Helix 6
AA6
B
179 192Right-handed alpha
Helix 7
AA7
B
195 200Right-handed alpha
Helix 8
AA8
B
230 249Right-handed alpha
Helix 9
AA9
B
252 292Right-handed alpha
Helix 10
AB1
B
294 302Right-handed alpha
Helix 11
AB2
B
302 319Right-handed alpha
Helix 12
AB3
B
319 329Right-handed alpha
Helix 13
AB4
B
332 340Right-handed alpha
Helix 14
AB5
B
340 351Right-handed alpha
Helix 15
AB6
B
352 367Right-handed alpha
Helix 16
AB7
B
371 386Right-handed alpha
Helix 17
AB8
B
387 405Right-handed alpha
Helix 18
AB9
B
410 428Right-handed alpha
Helix 19
AC1
B
438 447Right-handed alpha
Helix 20
AC2
B
452 487Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8QRP.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 210first strand
Strand 2
B
219 227anti-parallel
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