Analysis of interatomic Contacts of Structural Units in PDB entry:
8QRZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QRZ entry

There are 4 chains in PDB entry 8QRZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 435
B	MET 1	GLU 435
C	MET 1	GLU 435
D	MET 1	GLU 435

There are 64 helices in PDB entry 8QRZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	77	Right-handed alpha
Helix 2	AA2	A	117	121	Right-handed 310
Helix 3	AA3	A	149	152	Right-handed 310
Helix 4	AA4	A	160	171	Right-handed alpha
Helix 5	AA5	A	180	184	Right-handed alpha
Helix 6	AA6	A	191	206	Right-handed alpha
Helix 7	AA7	A	231	249	Right-handed alpha
Helix 8	AA8	A	270	277	Right-handed alpha
Helix 9	AA9	A	278	286	Right-handed alpha
Helix 10	AB1	A	301	315	Right-handed alpha
Helix 11	AB2	A	326	329	Right-handed 310
Helix 12	AB3	A	345	350	Right-handed 310
Helix 13	AB4	A	354	359	Right-handed 310
Helix 14	AB5	A	361	363	Right-handed 310
Helix 15	AB6	A	385	396	Right-handed alpha
Helix 16	AB7	A	413	434	Right-handed alpha
Helix 17	AB8	B	70	77	Right-handed alpha
Helix 18	AB9	B	117	121	Right-handed 310
Helix 19	AC1	B	149	152	Right-handed 310
Helix 20	AC2	B	160	171	Right-handed alpha
Helix 21	AC3	B	180	184	Right-handed alpha
Helix 22	AC4	B	191	206	Right-handed alpha
Helix 23	AC5	B	231	250	Right-handed alpha
Helix 24	AC6	B	270	277	Right-handed alpha
Helix 25	AC7	B	278	286	Right-handed alpha
Helix 26	AC8	B	301	315	Right-handed alpha
Helix 27	AC9	B	326	329	Right-handed 310
Helix 28	AD1	B	346	350	Right-handed 310
Helix 29	AD2	B	354	359	Right-handed 310
Helix 30	AD3	B	361	363	Right-handed 310
Helix 31	AD4	B	385	396	Right-handed alpha
Helix 32	AD5	B	413	434	Right-handed alpha
Helix 33	AD6	C	70	77	Right-handed alpha
Helix 34	AD7	C	117	121	Right-handed 310
Helix 35	AD8	C	149	152	Right-handed 310
Helix 36	AD9	C	160	170	Right-handed alpha
Helix 37	AE1	C	180	184	Right-handed alpha
Helix 38	AE2	C	191	206	Right-handed alpha
Helix 39	AE3	C	231	249	Right-handed alpha
Helix 40	AE4	C	270	277	Right-handed alpha
Helix 41	AE5	C	278	286	Right-handed alpha
Helix 42	AE6	C	301	315	Right-handed alpha
Helix 43	AE7	C	326	329	Right-handed 310
Helix 44	AE8	C	345	350	Right-handed 310
Helix 45	AE9	C	354	356	Right-handed 310
Helix 46	AF1	C	357	362	Right-handed alpha
Helix 47	AF2	C	385	396	Right-handed alpha
Helix 48	AF3	C	413	435	Right-handed alpha
Helix 49	AF4	D	70	77	Right-handed alpha
Helix 50	AF5	D	117	121	Right-handed 310
Helix 51	AF6	D	149	152	Right-handed 310
Helix 52	AF7	D	160	170	Right-handed alpha
Helix 53	AF8	D	180	184	Right-handed alpha
Helix 54	AF9	D	191	206	Right-handed alpha
Helix 55	AG1	D	231	249	Right-handed alpha
Helix 56	AG2	D	270	286	Right-handed alpha
Helix 57	AG3	D	301	315	Right-handed alpha
Helix 58	AG4	D	326	329	Right-handed 310
Helix 59	AG5	D	340	344	Right-handed 310
Helix 60	AG6	D	345	350	Right-handed 310
Helix 61	AG7	D	354	356	Right-handed 310
Helix 62	AG8	D	357	362	Right-handed alpha
Helix 63	AG9	D	385	396	Right-handed alpha
Helix 64	AH1	D	413	435	Right-handed alpha

There are 16 sheets in PDB entry 8QRZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	21	29	anti-parallel
Strand 3	A	88	93	anti-parallel
Strand 4	A	61	64	anti-parallel
Strand 5	A	67	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	81	82	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	102	111	anti-parallel
Strand 4	A	123	132	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	253	258	parallel
Strand 3	A	208	216	parallel
Strand 4	A	175	179	parallel
Strand 5	A	143	147	parallel
Strand 6	A	401	406	parallel
Strand 7	A	365	372	parallel
Strand 8	A	321	324	parallel
Strand 9	A	292	293	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	29	anti-parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	61	64	anti-parallel
Strand 5	B	67	69	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	81	82	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	102	111	anti-parallel
Strand 4	B	123	132	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	253	258	parallel
Strand 3	B	208	216	parallel
Strand 4	B	175	179	parallel
Strand 5	B	143	147	parallel
Strand 6	B	401	406	parallel
Strand 7	B	365	372	parallel
Strand 8	B	321	324	parallel
Strand 9	B	292	293	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	18	first strand
Strand 2	C	21	29	anti-parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	61	64	anti-parallel
Strand 5	C	67	69	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	81	82	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	42	49	anti-parallel
Strand 3	C	102	111	anti-parallel
Strand 4	C	123	132	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	253	258	parallel
Strand 3	C	208	216	parallel
Strand 4	C	175	179	parallel
Strand 5	C	143	147	parallel
Strand 6	C	401	406	parallel
Strand 7	C	365	372	parallel
Strand 8	C	321	324	parallel
Strand 9	C	292	293	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	18	first strand
Strand 2	D	21	29	anti-parallel
Strand 3	D	88	93	anti-parallel
Strand 4	D	61	64	anti-parallel
Strand 5	D	67	69	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	81	82	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	42	49	anti-parallel
Strand 3	D	102	111	anti-parallel
Strand 4	D	123	132	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	253	258	parallel
Strand 3	D	208	216	parallel
Strand 4	D	175	179	parallel
Strand 5	D	143	147	parallel
Strand 6	D	401	406	parallel
Strand 7	D	365	372	parallel
Strand 8	D	321	324	parallel
Strand 9	D	292	293	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QRZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QRZ