Analysis of interatomic Contacts of Structural Units in PDB entry:
8QSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QSD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8QSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4THR 231
H
 ARG 362SER 364
H
 ALA 366HIS 370
J
 GLY -4THR 231
S
 ASP 361SER 364
S
 ALA 366VAL 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8QSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
79 106Right-handed alpha
Helix 5
AA5
A
113 135Right-handed alpha
Helix 6
AA6
A
137 162Right-handed alpha
Helix 7
AA7
A
166 183Right-handed alpha
Helix 8
AA8
A
186 204Right-handed alpha
Helix 9
AA9
A
205 208Right-handed 310
Helix 10
AB1
A
212 231Right-handed alpha
Helix 11
AB2
J
2 16Right-handed alpha
Helix 12
AB3
J
18 31Right-handed alpha
Helix 13
AB4
J
37 69Right-handed alpha
Helix 14
AB5
J
79 106Right-handed alpha
Helix 15
AB6
J
113 135Right-handed alpha
Helix 16
AB7
J
136 162Right-handed alpha
Helix 17
AB8
J
166 183Right-handed alpha
Helix 18
AB9
J
186 204Right-handed alpha
Helix 19
AC1
J
205 208Right-handed 310
Helix 20
AC2
J
212 231Right-handed alpha
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There are no sheets in PDB entry 8QSD
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