Analysis of interatomic Contacts of Structural Units in PDB entry:
8QSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QSP entry

There are 4 chains in PDB entry 8QSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 899	PRO 1229
B	HIS 895	PRO 1229
C	GLY 899	PRO 1229
D	HIS 894	PRO 1229

There are 36 helices in PDB entry 8QSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1026	1029	Right-handed 310
Helix 2	AA2	A	1043	1047	Right-handed 310
Helix 3	AA3	A	1057	1065	Right-handed alpha
Helix 4	AA4	A	1079	1084	Right-handed alpha
Helix 5	AA5	A	1085	1096	Right-handed alpha
Helix 6	AA6	A	1097	1102	Right-handed 310
Helix 7	AA7	A	1103	1108	Right-handed alpha
Helix 8	AA8	A	1112	1125	Right-handed alpha
Helix 9	AA9	A	1130	1149	Right-handed alpha
Helix 10	AB1	A	1164	1169	Right-handed alpha
Helix 11	AB2	B	1026	1029	Right-handed 310
Helix 12	AB3	B	1043	1048	Right-handed 310
Helix 13	AB4	B	1057	1065	Right-handed alpha
Helix 14	AB5	B	1079	1084	Right-handed alpha
Helix 15	AB6	B	1087	1100	Right-handed alpha
Helix 16	AB7	B	1103	1110	Right-handed alpha
Helix 17	AB8	B	1112	1126	Right-handed alpha
Helix 18	AB9	B	1130	1149	Right-handed alpha
Helix 19	AC1	C	1026	1029	Right-handed 310
Helix 20	AC2	C	1057	1066	Right-handed alpha
Helix 21	AC3	C	1079	1084	Right-handed alpha
Helix 22	AC4	C	1084	1096	Right-handed alpha
Helix 23	AC5	C	1100	1102	Right-handed 310
Helix 24	AC6	C	1103	1108	Right-handed alpha
Helix 25	AC7	C	1112	1126	Right-handed alpha
Helix 26	AC8	C	1130	1150	Right-handed alpha
Helix 27	AC9	C	1164	1169	Right-handed alpha
Helix 28	AD1	D	1026	1029	Right-handed 310
Helix 29	AD2	D	1057	1065	Right-handed alpha
Helix 30	AD3	D	1079	1084	Right-handed alpha
Helix 31	AD4	D	1087	1096	Right-handed alpha
Helix 32	AD5	D	1100	1102	Right-handed 310
Helix 33	AD6	D	1103	1108	Right-handed alpha
Helix 34	AD7	D	1111	1124	Right-handed alpha
Helix 35	AD8	D	1130	1150	Right-handed alpha
Helix 36	AD9	D	1164	1169	Right-handed 310

There are 17 sheets in PDB entry 8QSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	918	920	first strand
Strand 2	A	910	912	anti-parallel
Strand 3	A	901	906	anti-parallel
Strand 4	A	1020	1024	anti-parallel
Strand 5	A	1010	1015	anti-parallel
Strand 6	A	1001	1006	anti-parallel
Strand 7	A	993	996	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	926	931	first strand
Strand 2	A	944	952	anti-parallel
Strand 3	A	959	968	anti-parallel
Strand 4	A	971	976	anti-parallel
Strand 5	A	979	982	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1176	1179	first strand
Strand 2	A	1205	1208	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1216	1218	first strand
Strand 2	A	1223	1225	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	918	919	first strand
Strand 2	B	910	912	anti-parallel
Strand 3	B	901	906	anti-parallel
Strand 4	B	1019	1024	anti-parallel
Strand 5	B	1010	1014	anti-parallel
Strand 6	B	1002	1006	anti-parallel
Strand 7	B	993	996	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	984	first strand
Strand 2	B	971	976	anti-parallel
Strand 3	B	959	968	anti-parallel
Strand 4	B	945	952	anti-parallel
Strand 5	B	926	931	anti-parallel
Strand 6	B	1033	1034	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1176	1178	first strand
Strand 2	B	1206	1208	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1216	1217	first strand
Strand 2	B	1224	1225	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	918	920	first strand
Strand 2	C	910	912	anti-parallel
Strand 3	C	901	906	anti-parallel
Strand 4	C	1019	1024	anti-parallel
Strand 5	C	1010	1014	anti-parallel
Strand 6	C	1002	1005	anti-parallel
Strand 7	C	994	996	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	926	931	first strand
Strand 2	C	944	952	anti-parallel
Strand 3	C	959	968	anti-parallel
Strand 4	C	971	976	anti-parallel
Strand 5	C	979	984	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1048	1049	first strand
Strand 2	C	1053	1054	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1176	1179	first strand
Strand 2	C	1205	1208	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1216	1217	first strand
Strand 2	C	1224	1225	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	918	920	first strand
Strand 2	D	910	912	anti-parallel
Strand 3	D	901	906	anti-parallel
Strand 4	D	1019	1024	anti-parallel
Strand 5	D	1010	1014	anti-parallel
Strand 6	D	1001	1006	anti-parallel
Strand 7	D	993	998	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	926	931	first strand
Strand 2	D	944	952	anti-parallel
Strand 3	D	959	968	anti-parallel
Strand 4	D	971	976	anti-parallel
Strand 5	D	979	984	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1176	1179	first strand
Strand 2	D	1205	1208	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1216	1218	first strand
Strand 2	D	1223	1225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QSP