Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QTG entry

There is 1 chain in PDB entry 8QTG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37ASP 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8QTG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 61Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
73 92Right-handed alpha
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
104 129Right-handed alpha
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
137 161Right-handed alpha
Helix 8
AA8
A
162 165Right-handed 310
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
175 187Right-handed alpha
Helix 11
AB2
A
194 205Right-handed alpha
Helix 12
AB3
A
209 221Right-handed alpha
Helix 13
AB4
A
230 240Right-handed alpha
Helix 14
AB5
A
242 244Right-handed 310
Helix 15
AB6
A
245 254Right-handed alpha
Helix 16
AB7
A
265 275Right-handed alpha
Helix 17
AB8
A
315 326Right-handed alpha
Helix 18
AB9
A
341 346Right-handed 310
Helix 19
AC1
A
356 365Right-handed alpha
Helix 20
AC2
A
393 403Right-handed alpha
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There are 4 sheets in PDB entry 8QTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
227 229anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
282 287parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
306 309anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
282 287parallel
Strand 3
A
331 332parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
383 386anti-parallel
Strand 3
A
417 420anti-parallel
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