Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QTI entry

There are 9 chains in PDB entry 8QTI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	LEU 2	PRO 236
C	ASN 21	SER 1130
F	ASP 143	ASP 466
O	G 1	G 50
D	PHE 6	ALA 1283
E	SER 24	GLU 107
J	LEU 6	LEU 104
P	C 1	C 50

There are123 helices in PDB entry 8QTI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	82	Right-handed alpha
Helix 3	AA3	A	151	156	Right-handed alpha
Helix 4	AA4	A	203	224	Right-handed alpha
Helix 5	AA5	B	29	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	45	57	Right-handed alpha
Helix 10	AB1	C	58	69	Right-handed alpha
Helix 11	AB2	C	75	85	Right-handed alpha
Helix 12	AB3	C	109	117	Right-handed alpha
Helix 13	AB4	C	225	232	Right-handed alpha
Helix 14	AB5	C	237	243	Right-handed alpha
Helix 15	AB6	C	247	256	Right-handed alpha
Helix 16	AB7	C	260	273	Right-handed alpha
Helix 17	AB8	C	279	292	Right-handed alpha
Helix 18	AB9	C	300	312	Right-handed alpha
Helix 19	AC1	C	325	342	Right-handed alpha
Helix 20	AC2	C	371	396	Right-handed alpha
Helix 21	AC3	C	404	409	Right-handed alpha
Helix 22	AC4	C	411	425	Right-handed alpha
Helix 23	AC5	C	435	444	Right-handed alpha
Helix 24	AC6	C	455	459	Right-handed 310
Helix 25	AC7	C	460	465	Right-handed alpha
Helix 26	AC8	C	467	471	Right-handed 310
Helix 27	AC9	C	523	528	Right-handed alpha
Helix 28	AD1	C	581	585	Right-handed 310
Helix 29	AD2	C	587	591	Right-handed 310
Helix 30	AD3	C	592	604	Right-handed alpha
Helix 31	AD4	C	620	630	Right-handed alpha
Helix 32	AD5	C	721	725	Right-handed 310
Helix 33	AD6	C	730	735	Right-handed alpha
Helix 34	AD7	C	770	774	Right-handed 310
Helix 35	AD8	C	806	817	Right-handed alpha
Helix 36	AD9	C	891	895	Right-handed 310
Helix 37	AE1	C	912	917	Right-handed alpha
Helix 38	AE2	C	919	933	Right-handed alpha
Helix 39	AE3	C	951	954	Right-handed 310
Helix 40	AE4	C	972	982	Right-handed alpha
Helix 41	AE5	C	1027	1031	Right-handed 310
Helix 42	AE6	C	1060	1071	Right-handed alpha
Helix 43	AE7	C	1072	1081	Right-handed alpha
Helix 44	AE8	C	1086	1100	Right-handed alpha
Helix 45	AE9	C	1109	1120	Right-handed alpha
Helix 46	AF1	F	147	159	Right-handed alpha
Helix 47	AF2	F	164	174	Right-handed alpha
Helix 48	AF3	F	180	207	Right-handed alpha
Helix 49	AF4	F	212	246	Right-handed alpha
Helix 50	AF5	F	247	249	Right-handed 310
Helix 51	AF6	F	254	273	Right-handed alpha
Helix 52	AF7	F	280	301	Right-handed alpha
Helix 53	AF8	F	307	329	Right-handed alpha
Helix 54	AF9	F	333	341	Right-handed alpha
Helix 55	AG1	F	344	355	Right-handed alpha
Helix 56	AG2	F	372	376	Right-handed 310
Helix 57	AG3	F	384	405	Right-handed alpha
Helix 58	AG4	F	408	418	Right-handed alpha
Helix 59	AG5	F	427	432	Right-handed alpha
Helix 60	AG6	F	437	453	Right-handed alpha
Helix 61	AG7	F	454	459	Right-handed alpha
Helix 62	AG8	F	460	464	Right-handed 310
Helix 63	AG9	D	16	23	Right-handed alpha
Helix 64	AH1	D	48	53	Right-handed alpha
Helix 65	AH2	D	67	71	Right-handed 310
Helix 66	AH3	D	84	90	Right-handed 310
Helix 67	AH4	D	103	108	Right-handed alpha
Helix 68	AH5	D	112	119	Right-handed alpha
Helix 69	AH6	D	121	130	Right-handed alpha
Helix 70	AH7	D	140	147	Right-handed alpha
Helix 71	AH8	D	147	181	Right-handed alpha
Helix 72	AH9	D	190	228	Right-handed alpha
Helix 73	AI1	D	237	248	Right-handed alpha
Helix 74	AI2	D	257	267	Right-handed alpha
Helix 75	AI3	D	269	284	Right-handed alpha
Helix 76	AI4	D	286	304	Right-handed alpha
Helix 77	AI5	D	308	311	Right-handed 310
Helix 78	AI6	D	321	325	Right-handed 310
Helix 79	AI7	D	339	360	Right-handed alpha
Helix 80	AI8	D	363	383	Right-handed alpha
Helix 81	AI9	D	402	407	Right-handed 310
Helix 82	AJ1	D	445	463	Right-handed alpha
Helix 83	AJ2	D	468	479	Right-handed alpha
Helix 84	AJ3	D	480	492	Right-handed alpha
Helix 85	AJ4	D	505	507	Right-handed 310
Helix 86	AJ5	D	525	527	Right-handed 310
Helix 87	AJ6	D	528	533	Right-handed alpha
Helix 88	AJ7	D	548	558	Right-handed alpha
Helix 89	AJ8	D	560	564	Right-handed 310
Helix 90	AJ9	D	579	590	Right-handed alpha
Helix 91	AK1	D	614	623	Right-handed alpha
Helix 92	AK2	D	643	651	Right-handed alpha
Helix 93	AK3	D	667	674	Right-handed alpha
Helix 94	AK4	D	688	703	Right-handed alpha
Helix 95	AK5	D	704	725	Right-handed alpha
Helix 96	AK6	D	740	762	Right-handed alpha
Helix 97	AK7	D	765	792	Right-handed alpha
Helix 98	AK8	D	796	804	Right-handed alpha
Helix 99	AK9	D	809	818	Right-handed alpha
Helix 100	AL1	D	844	881	Right-handed alpha
Helix 101	AL2	D	944	955	Right-handed alpha
Helix 102	AL3	D	963	967	Right-handed 310
Helix 103	AL4	D	975	979	Right-handed alpha
Helix 104	AL5	D	993	1004	Right-handed alpha
Helix 105	AL6	D	1005	1009	Right-handed 310
Helix 106	AL7	D	1028	1038	Right-handed alpha
Helix 107	AL8	D	1118	1126	Right-handed alpha
Helix 108	AL9	D	1127	1146	Right-handed alpha
Helix 109	AM1	D	1151	1163	Right-handed alpha
Helix 110	AM2	D	1184	1195	Right-handed alpha
Helix 111	AM3	D	1210	1217	Right-handed alpha
Helix 112	AM4	D	1220	1228	Right-handed alpha
Helix 113	AM5	D	1229	1241	Right-handed alpha
Helix 114	AM6	D	1250	1256	Right-handed alpha
Helix 115	AM7	D	1261	1264	Right-handed 310
Helix 116	AM8	D	1265	1270	Right-handed alpha
Helix 117	AM9	D	1276	1283	Right-handed alpha
Helix 118	AN1	E	30	34	Right-handed 310
Helix 119	AN2	E	36	42	Right-handed alpha
Helix 120	AN3	E	46	66	Right-handed alpha
Helix 121	AN4	E	87	99	Right-handed alpha
Helix 122	AN5	J	80	87	Right-handed alpha
Helix 123	AN6	J	90	104	Right-handed alpha

There are 44 sheets in PDB entry 8QTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	180	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	133	147	anti-parallel
Strand 4	A	47	56	anti-parallel
Strand 5	A	162	163	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	133	147	anti-parallel
Strand 4	A	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	186	198	anti-parallel
Strand 4	B	171	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	137	138	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	141	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	182	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	213	217	anti-parallel
Strand 5	C	223	224	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	354	355	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	514	522	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	569	571	anti-parallel
Strand 4	C	532	533	parallel
Strand 5	C	549	553	anti-parallel
Strand 6	C	559	563	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	668	first strand
Strand 2	C	674	675	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	877	anti-parallel
Strand 4	C	884	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	708	714	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	836	845	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	799	anti-parallel
Strand 3	C	823	825	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1034	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1058	1059	first strand
Strand 2	D	420	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1127	1129	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1243	1245	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	360	first strand
Strand 2	D	335	337	parallel
Strand 3	D	327	330	anti-parallel
Strand 4	J	8	9	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	661	666	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	899	first strand
Strand 2	D	958	962	anti-parallel
Strand 3	D	923	924	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	901	902	first strand
Strand 2	D	910	911	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1082	first strand
Strand 2	D	1062	1069	anti-parallel
Strand 3	D	1052	1056	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1170	anti-parallel
Strand 3	D	1203	1206	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1275	first strand
Strand 2	E	101	105	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	29	first strand
Strand 2	J	43	45	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	40	first strand
Strand 2	J	32	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QTI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTI