Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QTM entry

There are 2 chains in PDB entry 8QTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6GLY 967
B
 LYS 5HIS 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 8QTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
29 50Right-handed alpha
Helix 3
AA3
A
50 71Right-handed alpha
Helix 4
AA4
A
72 85Right-handed alpha
Helix 5
AA5
A
87 116Right-handed alpha
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
126 132Right-handed 310
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
153 163Right-handed alpha
Helix 10
AB1
A
179 197Right-handed alpha
Helix 11
AB2
A
202 222Right-handed alpha
Helix 12
AB3
A
232 241Right-handed alpha
Helix 13
AB4
A
241 247Right-handed alpha
Helix 14
AB5
A
247 265Right-handed alpha
Helix 15
AB6
A
296 326Right-handed alpha
Helix 16
AB7
A
332 343Right-handed alpha
Helix 17
AB8
A
365 391Right-handed alpha
Helix 18
AB9
A
397 401Right-handed 310
Helix 19
AC1
A
404 422Right-handed alpha
Helix 20
AC2
A
424 429Right-handed alpha
Helix 21
AC3
A
430 443Right-handed alpha
Helix 22
AC4
A
455 469Right-handed alpha
Helix 23
AC5
A
478 492Right-handed alpha
Helix 24
AC6
A
504 519Right-handed alpha
Helix 25
AC7
A
521 523Right-handed 310
Helix 26
AC8
A
535 548Right-handed alpha
Helix 27
AC9
A
563 579Right-handed alpha
Helix 28
AD1
A
580 588Right-handed alpha
Helix 29
AD2
A
596 605Right-handed alpha
Helix 30
AD3
A
605 627Right-handed alpha
Helix 31
AD4
A
645 655Right-handed alpha
Helix 32
AD5
A
669 678Right-handed alpha
Helix 33
AD6
A
679 700Right-handed alpha
Helix 34
AD7
A
706 729Right-handed alpha
Helix 35
AD8
A
733 741Right-handed alpha
Helix 36
AD9
A
743 750Right-handed alpha
Helix 37
AE1
A
769 780Right-handed alpha
Helix 38
AE2
A
783 788Right-handed alpha
Helix 39
AE3
A
789 801Right-handed alpha
Helix 40
AE4
A
802 815Right-handed alpha
Helix 41
AE5
A
815 831Right-handed alpha
Helix 42
AE6
A
833 845Right-handed alpha
Helix 43
AE7
A
846 848Right-handed 310
Helix 44
AE8
A
849 871Right-handed alpha
Helix 45
AE9
A
880 910Right-handed alpha
Helix 46
AF1
A
948 964Right-handed alpha
Helix 47
AF2
B
7 20Right-handed alpha
Helix 48
AF3
B
29 50Right-handed alpha
Helix 49
AF4
B
50 71Right-handed alpha
Helix 50
AF5
B
72 85Right-handed alpha
Helix 51
AF6
B
87 115Right-handed alpha
Helix 52
AF7
B
119 123Right-handed 310
Helix 53
AF8
B
126 132Right-handed 310
Helix 54
AF9
B
141 142Right-handed 310
Helix 55
AG1
B
144 144Right-handed 310
Helix 56
AG2
B
145 149Right-handed alpha
Helix 57
AG3
B
153 163Right-handed alpha
Helix 58
AG4
B
179 197Right-handed alpha
Helix 59
AG5
B
202 222Right-handed alpha
Helix 60
AG6
B
232 241Right-handed alpha
Helix 61
AG7
B
241 247Right-handed alpha
Helix 62
AG8
B
247 266Right-handed alpha
Helix 63
AG9
B
296 326Right-handed alpha
Helix 64
AH1
B
332 343Right-handed alpha
Helix 65
AH2
B
365 391Right-handed alpha
Helix 66
AH3
B
397 401Right-handed 310
Helix 67
AH4
B
404 422Right-handed alpha
Helix 68
AH5
B
424 429Right-handed alpha
Helix 69
AH6
B
430 443Right-handed alpha
Helix 70
AH7
B
455 469Right-handed alpha
Helix 71
AH8
B
478 492Right-handed alpha
Helix 72
AH9
B
504 519Right-handed alpha
Helix 73
AI1
B
520 523Right-handed 310
Helix 74
AI2
B
535 549Right-handed alpha
Helix 75
AI3
B
563 579Right-handed alpha
Helix 76
AI4
B
580 587Right-handed alpha
Helix 77
AI5
B
596 605Right-handed alpha
Helix 78
AI6
B
605 627Right-handed alpha
Helix 79
AI7
B
639 643Right-handed 310
Helix 80
AI8
B
646 655Right-handed alpha
Helix 81
AI9
B
669 678Right-handed alpha
Helix 82
AJ1
B
679 700Right-handed alpha
Helix 83
AJ2
B
706 729Right-handed alpha
Helix 84
AJ3
B
733 741Right-handed alpha
Helix 85
AJ4
B
743 750Right-handed alpha
Helix 86
AJ5
B
769 780Right-handed alpha
Helix 87
AJ6
B
783 788Right-handed alpha
Helix 88
AJ7
B
789 801Right-handed alpha
Helix 89
AJ8
B
803 815Right-handed alpha
Helix 90
AJ9
B
815 831Right-handed alpha
Helix 91
AK1
B
833 845Right-handed alpha
Helix 92
AK2
B
846 848Right-handed 310
Helix 93
AK3
B
849 871Right-handed alpha
Helix 94
AK4
B
880 910Right-handed alpha
Helix 95
AK5
B
934 938Right-handed 310
Helix 96
AK6
B
947 964Right-handed alpha
Helix 97
AK7
C
7 20Right-handed alpha
Helix 98
AK8
C
29 50Right-handed alpha
Helix 99
AK9
C
50 71Right-handed alpha
Helix 100
AL1
C
72 85Right-handed alpha
Helix 101
AL2
C
87 116Right-handed alpha
Helix 102
AL3
C
119 123Right-handed 310
Helix 103
AL4
C
126 132Right-handed 310
Helix 104
AL5
C
138 148Right-handed alpha
Helix 105
AL6
C
153 163Right-handed alpha
Helix 106
AL7
C
179 197Right-handed alpha
Helix 107
AL8
C
202 222Right-handed alpha
Helix 108
AL9
C
232 241Right-handed alpha
Helix 109
AM1
C
241 247Right-handed alpha
Helix 110
AM2
C
247 265Right-handed alpha
Helix 111
AM3
C
296 326Right-handed alpha
Helix 112
AM4
C
332 343Right-handed alpha
Helix 113
AM5
C
351 355Right-handed 310
Helix 114
AM6
C
365 391Right-handed alpha
Helix 115
AM7
C
397 401Right-handed 310
Helix 116
AM8
C
404 422Right-handed alpha
Helix 117
AM9
C
424 429Right-handed alpha
Helix 118
AN1
C
430 443Right-handed alpha
Helix 119
AN2
C
455 469Right-handed alpha
Helix 120
AN3
C
478 492Right-handed alpha
Helix 121
AN4
C
504 519Right-handed alpha
Helix 122
AN5
C
521 523Right-handed 310
Helix 123
AN6
C
535 549Right-handed alpha
Helix 124
AN7
C
563 579Right-handed alpha
Helix 125
AN8
C
580 588Right-handed alpha
Helix 126
AN9
C
596 605Right-handed alpha
Helix 127
AO1
C
605 627Right-handed alpha
Helix 128
AO2
C
646 655Right-handed alpha
Helix 129
AO3
C
669 678Right-handed alpha
Helix 130
AO4
C
679 700Right-handed alpha
Helix 131
AO5
C
706 729Right-handed alpha
Helix 132
AO6
C
733 741Right-handed alpha
Helix 133
AO7
C
743 750Right-handed alpha
Helix 134
AO8
C
769 780Right-handed alpha
Helix 135
AO9
C
783 788Right-handed alpha
Helix 136
AP1
C
789 801Right-handed alpha
Helix 137
AP2
C
803 815Right-handed alpha
Helix 138
AP3
C
815 831Right-handed alpha
Helix 139
AP4
C
833 845Right-handed alpha
Helix 140
AP5
C
846 848Right-handed 310
Helix 141
AP6
C
849 871Right-handed alpha
Helix 142
AP7
C
880 910Right-handed alpha
Helix 143
AP8
C
934 939Right-handed 310
Helix 144
AP9
C
947 964Right-handed alpha
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There are 3 sheets in PDB entry 8QTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
279 283parallel
Strand 3
A
448 454parallel
Strand 4
A
525 531parallel
Strand 5
A
556 561parallel
Strand 6
A
590 595parallel
Strand 7
A
630 635parallel
Strand 8
A
663 668parallel
Strand 9
A
165 170parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
556 559first strand
Strand 2
B
525 531parallel
Strand 3
B
448 454parallel
Strand 4
B
279 283parallel
Strand 5
B
165 170parallel
Strand 6
B
663 668parallel
Strand 7
B
630 635parallel
Strand 8
B
590 595parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 170first strand
Strand 2
C
279 283parallel
Strand 3
C
448 454parallel
Strand 4
C
525 533parallel
Strand 5
C
556 561parallel
Strand 6
C
590 595parallel
Strand 7
C
630 635parallel
Strand 8
C
663 668parallel
Strand 9
C
165 170parallel
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